Factsheet for Solyc06g071900.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069375	Potato	cytosol	87.1	98.31
VIT_06s0004g04690.t01	Wine grape	mitochondrion	68.22	69.39
KRH10262	Soybean	mitochondrion	64.3	67.85
KRH23068	Soybean	mitochondrion	63.36	66.86
AT1G07590.1	Thale cress	mitochondrion	61.12	61.24
Bra031586.1-P	Field mustard	mitochondrion	59.81	60.26
CDY09903	Canola	mitochondrion	59.44	60.0
CDY06272	Canola	mitochondrion	59.25	59.81
GSMUA_Achr9P23230_001	Banana	mitochondrion	57.57	59.0
TraesCS7D01G293300.1	Wheat	mitochondrion	53.46	55.75
TraesCS7B01G189100.1	Wheat	mitochondrion	53.08	55.36
TraesCS7A01G296400.1	Wheat	mitochondrion	52.9	55.17
Zm00001d024521_P001	Maize	mitochondrion	52.52	54.67
HORVU7Hr1G066420.6	Barley	plastid	51.4	52.28
OQU79953	Sorghum	cytosol	54.02	46.24
Solyc11g006380.1.1	Tomato	cytosol	20.93	22.76
Solyc10g047370.1.1	Tomato	mitochondrion	16.26	21.8
Solyc01g089870.2.1	Tomato	nucleus	21.87	21.47
Solyc02g078350.2.1	Tomato	cytosol, mitochondrion	19.63	21.38
Solyc07g054100.1.1	Tomato	cytosol	12.71	21.05
Solyc01g079320.2.1	Tomato	cytosol, mitochondrion	19.07	21.03
Solyc02g078330.2.1	Tomato	cytosol, mitochondrion	17.57	20.7
Solyc01g081320.2.1	Tomato	plastid	19.25	19.88
Solyc06g005140.2.1	Tomato	mitochondrion	19.25	19.81
Solyc07g054090.2.1	Tomato	cytosol, mitochondrion, plastid	17.76	19.27
Solyc12g020050.1.1	Tomato	plastid	21.31	18.27
Solyc01g100580.2.1	Tomato	mitochondrion	16.07	17.84
Solyc07g063220.2.1	Tomato	plastid	18.5	17.84

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0046686	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990
UniProt:K4C8R2	PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF588	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	EnsemblPlantsGene:Solyc06g071900.2	EnsemblPlants:Solyc06g071900.2.1	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002765572	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:-:44293566..44296860

Molecular Weight (calculated)

61295.7 Da

IEP (calculated)

9.652

GRAVY (calculated)

-0.231

Length

535 amino acids

Sequence
(BLAST)

001: MNFISILWKQ RITSAIHQTI VISLSKQTIH SCQVYCLKTS DANFTSEKSE SEKEERLVDQ GMVTTRNSLS QRIESVPIGE SIGSTFQSWM GDGLPIHRGD
101: IFHTMNRLRK LKLNKRALEV MEWVIRERPY RPKELDYSYL VEFTSKLHGI SQAESLFSRI PSEFQNELLY NNLILGCLDR GLIRLSLAYM KKMRELDHPI
201: SYLVFNHLII LHSSPSRKKF IPKILTQMKA DKVTPHVSTF NILLKIEANQ HNIEGLLKVF SDMKRAKVEP NEVSYCILAN AHAVARLYTV CETYTEAIEK
301: SATGQNWSTL DILVILYGYL GKRNDLERTW GVILELSHVR SKSYVLAIEA FGRIGDLCRA EELWSAMKSR NSLKSNEQFN SLIAVYCRHG HITKATALYK
401: EMEKSGCKPN AITYRHLALG CLRAGLIKEA IKTLQLGMDM KTSIKVKRST PWLETTLSII EIFADNGDVE NAEKLFEELK KANYTRYTFV YNALIKAYVK
501: GKVYDPNLLK RMILGGARPD SESYSLLKVI DQLRT

Best Arabidopsis Sequence Match ( AT1G07590.1 )
(BLAST)

001: MRSIIALMRQ REYFVQAIRR TTCVASPALN QTNFQASSFL TTLISSKKSP EETCIGSEEE EEEPNKCLSL RIEKLPKGVT VGSALQSWMG DGFPVHGGDV
101: YHAINRLRKL GRNKRALELM EWIIRERPYR LGELEYSYLL EFTVKLHGVS QGEKLFTRVP QEFQNELLYN NLVIACLDQG VIRLALEYMK KMRELGYRTS
201: HLVYNRLIIR NSAPGRRKLI AKDLALMKAD KATPHVSTYH ILMKLEANEH NIDGVLKAFD GMKKAGVEPN EVSYCILAMA HAVARLYTVA EAYTEEIEKS
301: ITGDNWSTLD ILMILYGRLG KEKELARTWN VIRGFHHVRS KSYLLATEAF ARVGNLDRAE ELWLEMKNVK GLKETEQFNS LLSVYCKDGL IEKAIGVFRE
401: MTGNGFKPNS ITYRHLALGC AKAKLMKEAL KNIEMGLNLK TSKSIGSSTP WLETTLSIIE CFAEKGDVEN SEKLFEEVKN AKYNRYAFVY NALFKAYVKA
501: KVYDPNLFKR MVLGGARPDA ESYSLLKLVE QYKP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g07590, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q940Q2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.