Factsheet for VIT_12s0028g03880.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 3
nucleus 2
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0028g03870.t01	Wine grape	cytosol, mitochondrion	40.12	40.28
GSMUA_Achr5P20750_001	Banana	mitochondrion	39.52	36.26
VIT_19s0014g02920.t01	Wine grape	mitochondrion, plastid	33.53	33.33
OQU91552	Sorghum	mitochondrion	33.73	33.14
TraesCS1D01G166700.1	Wheat	mitochondrion	32.53	32.93
TraesCS1B01G188200.1	Wheat	mitochondrion	32.34	32.93
Os10t0501000-01	Rice	cytosol	29.54	32.82
Os10t0501300-01	Rice	mitochondrion	33.53	32.75
VIT_10s0597g00040.t01	Wine grape	extracellular	32.73	32.41
Zm00001d032543_P001	Maize	mitochondrion	32.73	31.72
VIT_00s0394g00020.t01	Wine grape	cytosol	30.14	30.88
VIT_18s0001g07000.t01	Wine grape	mitochondrion	29.74	29.68
VIT_16s0039g02800.t01	Wine grape	cytosol	28.74	28.92
VIT_11s0078g00180.t01	Wine grape	cytosol	10.78	28.27
VIT_15s0021g01300.t01	Wine grape	plastid	29.54	28.08
VIT_07s0005g01630.t01	Wine grape	mitochondrion	25.95	27.54
TraesCS1A01G168700.1	Wheat	mitochondrion	31.54	27.05
Os10t0501200-00	Rice	mitochondrion	33.73	27.0
VIT_14s0060g01120.t01	Wine grape	cytosol, mitochondrion	26.15	26.31
VIT_08s0007g05090.t01	Wine grape	mitochondrion	21.16	16.99
VIT_06s0004g04690.t01	Wine grape	mitochondrion	17.56	16.73

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100853569	wikigene:100853569	MapMan:35.1	EMBL:AM441052	ProteinID:CAN73943
ProteinID:CAN73943.1	ProteinID:CBI21839	ProteinID:CBI21839.3	UniProt:E0CTC4	EMBL:FN595235	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
InterPro:IPR002885	InterPro:IPR011990	EntrezGene:LOC100853569	wikigene:LOC100853569	PFAM:PF01535	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF1598	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI0001BE1D61	ArrayExpress:VIT_12s0028g03880	EnsemblPlantsGene:VIT_12s0028g03880	EnsemblPlants:VIT_12s0028g03880.t01	RefSeq:XP_003633265	RefSeq:XP_003633265.1

Description

No Description!

Coordinates

chr12:-:4735585..4738563

Molecular Weight (calculated)

57753.8 Da

IEP (calculated)

7.876

GRAVY (calculated)

-0.275

Length

501 amino acids

Sequence
(BLAST)

001: MKVVPFLGRP RHSKLPAEIQ ISSLYDRIQA VRDPKASISP LLNQWIEEGQ TVSKPQLQSL VRIMKDFRRF HHALEISQWM TDRRYFTLTP SDAAIRLDLI
101: SMVHGRVQAE SYFNNIPNNL KTSSAYGALL SGYVREKSVE KAEATMQKMR EMDFATSSFP YNMLINLYSQ TGNHGKIEAL IQEMQSKAIP CDAFTVRNLM
201: VAYVAASDIS AMEKFLNRME EDPHISVDWN IYSVAASGYL KVGLIDKALE MLKKIESNRP HLERLSAFKF LLSLYARTGH KQELYRVWNL YKPSYEYPEA
301: YSCMITCLTK LDDIEGAEKI FQEWECECTM YDFRVLNRLL SAYCKRCLFD KAESLVNKVI EERMPYASTW NILAKGYVED KQMPKAVEML KKAISVGRKG
401: WRPNSIILDA CIEYLEGQGN LEEIEEIARL CKNLGIPDGD IHHRFSSLNF NKSVIDLPVT NIMPSASGCN LSGSPLHWYC WFQLNNVTQM EKLVRFYELS
501: Y

Best Arabidopsis Sequence Match ( AT2G20710.1 )
(BLAST)

001: MKHLLLLRLV LPKPNYILRR SFLFHSGKTT PSPLDPYDTL QRRVARSGDP SASIIKVLDG WLDQGNLVKT SELHSIIKML RKFSRFSHAL QISDWMSEHR
101: VHEISEGDVA IRLDLIAKVG GLGEAEKFFE TIPMERRNYH LYGALLNCYA SKKVLHKAEQ VFQEMKELGF LKGCLPYNVM LNLYVRTGKY TMVEKLLREM
201: EDETVKPDIF TVNTRLHAYS VVSDVEGMEK FLMRCEADQG LHLDWRTYAD TANGYIKAGL TEKALEMLRK SEQMVNAQKR KHAYEVLMSF YGAAGKKEEV
301: YRLWSLYKEL DGFYNTGYIS VISALLKMDD IEEVEKIMEE WEAGHSLFDI RIPHLLITGY CKKGMMEKAE EVVNILVQKW RVEDTSTWER LALGYKMAGK
401: MEKAVEKWKR AIEVSKPGWR PHQVVLMSCV DYLEGQRDME GLRKILRLLS ERGHISYDQL LYDMNGAGLS WKIVDAMGKG RYVEEREVRI

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g20710, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.