Factsheet for VIT_10s0597g00040.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

extracellular: 26106900

msms PMID: 26106900 doi

C Guillier, M Gamm, G Lucchi, C Truntzer, D Pecqueur, P Ducoroy, M Adrian, MC Héloir

Clinical Innovation Proteomic Platform - CLIPP, 15 Boulevard Maréchal de Lattre de Tassigny, BP37013, F-21070 Dijon cedex, France., CNRS, UMR1347 Agroécologie, ERL CNRS 6300, BP 86510, F-21000 Dijon, France;, Université de Bourgogne, UMR1347 Agroécologie, ERL CNRS 6300, BP 86510, F-21000 Dijon, France;

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10858	Soybean	mitochondrion	67.0	69.75
VIT_19s0014g02920.t01	Wine grape	mitochondrion, plastid	61.66	61.9
AT4G21705.1	Thale cress	mitochondrion	58.3	59.96
PGSC0003DMT400076417	Potato	cytosol, mitochondrion	58.1	59.88
Solyc02g078350.2.1	Tomato	cytosol, mitochondrion	57.91	59.67
Bra038762.1-P	Field mustard	mitochondrion	56.52	58.61
CDX98698	Canola	mitochondrion	56.52	58.61
GSMUA_Achr1P02980_001	Banana	mitochondrion	55.73	53.21
EER91421	Sorghum	mitochondrion	46.84	47.78
TraesCS1A01G168800.1	Wheat	mitochondrion	48.02	47.55
Os07t0598500-01	Rice	mitochondrion	47.43	47.43
TraesCS1D01G166800.1	Wheat	mitochondrion	47.83	47.36
Zm00001d013923_P001	Maize	mitochondrion	46.25	46.8
HORVU1Hr1G045170.4	Barley	cytosol, mitochondrion, nucleus, plastid	47.83	46.63
TraesCS1B01G188100.1	Wheat	mitochondrion	47.04	46.58
EER90330	Sorghum	mitochondrion	44.86	45.22
EER90329	Sorghum	mitochondrion	43.48	43.74
CDX94049	Canola	cytosol	56.52	40.74
VIT_11s0078g00180.t01	Wine grape	cytosol	14.03	37.17
VIT_12s0028g03870.t01	Wine grape	cytosol, mitochondrion	34.59	35.07
VIT_12s0028g03880.t01	Wine grape	cytosol, mitochondrion	32.41	32.73
VIT_16s0039g02800.t01	Wine grape	cytosol	31.82	32.33
VIT_00s0394g00020.t01	Wine grape	cytosol	31.03	32.11
VIT_07s0005g01630.t01	Wine grape	mitochondrion	29.45	31.57
VIT_14s0060g01120.t01	Wine grape	cytosol, mitochondrion	30.63	31.12
VIT_15s0021g01300.t01	Wine grape	plastid	32.41	31.12
VIT_18s0001g07000.t01	Wine grape	mitochondrion	30.04	30.28
VIT_06s0004g04690.t01	Wine grape	mitochondrion	20.95	20.15
VIT_08s0007g05090.t01	Wine grape	mitochondrion	23.32	18.91

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100262431	wikigene:100262431	MapMan:35.1	EMBL:AM480779	ProteinID:CAN64166
ProteinID:CAN64166.1	ProteinID:CCB57426	ProteinID:CCB57426.1	UniProt:F6HRW8	EMBL:FN596054	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
InterPro:IPR002885	InterPro:IPR011990	InterPro:IPR019734	EntrezGene:LOC100262431	wikigene:LOC100262431	PFAM:PF01535
PFAM:PF13041	PFAM:PF13181	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1638	InterPro:Pentatricopeptide_repeat
SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI00021085A6	ArrayExpress:VIT_10s0597g00040
EnsemblPlantsGene:VIT_10s0597g00040	EnsemblPlants:VIT_10s0597g00040.t01	unigene:Vvi.21142	RefSeq:XP_003632962	RefSeq:XP_003632962.1	:

Description

No Description!

Coordinates

chr10:-:1296336..1298918

Molecular Weight (calculated)

57792.7 Da

IEP (calculated)

9.082

GRAVY (calculated)

-0.468

Length

506 amino acids

Sequence
(BLAST)

001: MDSRLFSLLR QSIQQYPQSL IRKNPISNRT YYTSRYGKIS LYNKISPLGD PNTSVVPELD NWVQNGNKVW VAELQRIIHD LRKRKRFSQA LEISEWMSKK
101: GICAFSPTEH AVQLDLIGRV RGFLSAESYF NSLQNHDKTD KTYGALLNCY VRQRQTDKSL SHLQKMKEMG FASSPLTYND IMCLYTNVGQ HEKVPDVLTE
201: MKQSNVYPDN FSYRICINSY GAQSDIQGME NVLKEMERQP HIVMDWNTYA VAANFYIKAG LPDKAIEALK KSEERLDKRD GLGYNHLISL YASLGNKAEV
301: LRLWSLEKSA CKRNINRDYI TMLESLVRLG ELEEAEKVLR EWESSGNCYD FRVPNIVIIG YSEKGLFEKA EAMLKELMEK GKITTPNSWG TVASGYMDEG
401: EMEKAVECMK AAISLHVNNK GRKPNSRVIA GILSWLGDKG RVEDVEAFVG SLRIVIPMNR RMYHTLIMAN IRAGKEVDGL LASMKADKIV EDEETKKILG
501: TKQNKI

Best Arabidopsis Sequence Match ( AT4G21705.1 )
(BLAST)

001: MNILRRIPAN LIASRYYYTN RVKKTTLYSK ISPLGDPKSS VYPELQNWVQ CGKKVSVAEL IRIVHDLRRR KRFLHALEVS KWMNETGVCV FSPTEHAVHL
101: DLIGRVYGFV TAEEYFENLK EQYKNDKTYG ALLNCYVRQQ NVEKSLLHFE KMKEMGFVTS SLTYNNIMCL YTNIGQHEKV PKVLEEMKEE NVAPDNYSYR
201: ICINAFGAMY DLERIGGTLR DMERRQDITM DWNTYAVAAK FYIDGGDCDR AVELLKMSEN RLEKKDGEGY NHLITLYARL GKKIEVLRLW DLEKDVCKRR
301: INQDYLTVLQ SLVKIDALVE AEEVLTEWKS SGNCYDFRVP NTVIRGYIGK SMEEKAEAML EDLARRGKAT TPESWELVAT AYAEKGTLEN AFKCMKTALG
401: VEVGSRKWRP GLTLVTSVLS WVGDEGSLKE VESFVASLRN CIGVNKQMYH ALVKADIREG GRNIDTLLQR MKDDKIEIDE ETTVILSTRS PC

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g21705, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84JR3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.