Factsheet for VIT_14s0060g01120.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007271	Potato	mitochondrion	52.41	54.04
Solyc01g100580.2.1	Tomato	mitochondrion	52.01	53.73
VIT_07s0005g01630.t01	Wine grape	mitochondrion	42.57	44.92
VIT_00s0394g00020.t01	Wine grape	cytosol	38.76	39.47
GSMUA_Achr11P...	Banana	mitochondrion	40.36	38.73
VIT_11s0078g00180.t01	Wine grape	cytosol	14.06	36.65
TraesCS6B01G118900.1	Wheat	cytosol	30.32	36.3
TraesCS6A01G091100.1	Wheat	mitochondrion	36.95	36.29
TraesCS6D01G079300.1	Wheat	mitochondrion	36.95	36.15
Zm00001d009122_P001	Maize	mitochondrion	37.35	36.12
Os01t0301000-01	Rice	mitochondrion	37.75	36.02
EES02848	Sorghum	mitochondrion	37.95	35.66
TraesCS6B01G119100.1	Wheat	mitochondrion	35.34	35.56
TraesCS6A01G091000.1	Wheat	mitochondrion	35.94	35.1
TraesCS6A01G091200.2	Wheat	cytosol	25.7	35.07
TraesCS2B01G583500.1	Wheat	mitochondrion	33.13	34.38
TraesCS2B01G584000.2	Wheat	mitochondrion	37.55	33.82
TraesCS2A01G552700.1	Wheat	mitochondrion	37.15	33.58
Os01t0301700-01	Rice	mitochondrion	33.94	33.53
TraesCS6D01G079200.1	Wheat	plastid	36.14	33.27
TraesCS2D01G553300.1	Wheat	mitochondrion	37.35	33.21
TraesCS6A01G090800.2	Wheat	mitochondrion	32.13	33.2
TraesCS6A01G090900.1	Wheat	mitochondrion	31.93	33.19
TraesCS6B01G119000.1	Wheat	mitochondrion	31.73	32.99
TraesCS6D01G079100.1	Wheat	mitochondrion	31.73	32.99
HORVU2Hr1G120330.4	Barley	endoplasmic reticulum, extracellular	33.13	32.93
HORVU6Hr1G016390.10	Barley	plastid	35.94	32.19
HORVU6Hr1G016360.7	Barley	mitochondrion	31.53	31.4
VIT_16s0039g02800.t01	Wine grape	cytosol	30.92	30.92
VIT_12s0028g03870.t01	Wine grape	cytosol, mitochondrion	30.72	30.66
VIT_10s0597g00040.t01	Wine grape	extracellular	31.12	30.63
Os01t0301500-01	Rice	cytosol, mitochondrion	29.72	30.58
VIT_19s0014g02920.t01	Wine grape	mitochondrion, plastid	30.72	30.36
VIT_18s0001g07000.t01	Wine grape	mitochondrion	30.52	30.28
TraesCS6D01G079400.1	Wheat	plastid	27.31	30.16
TraesCS2A01G552100.1	Wheat	mitochondrion	33.13	30.0
TraesCS2D01G553100.1	Wheat	mitochondrion	32.53	29.72
VIT_15s0021g01300.t01	Wine grape	plastid	28.31	26.76
VIT_12s0028g03880.t01	Wine grape	cytosol, mitochondrion	26.31	26.15
VIT_06s0004g04690.t01	Wine grape	mitochondrion	21.89	20.72
VIT_08s0007g05090.t01	Wine grape	mitochondrion	23.69	18.91

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100261266	wikigene:100261266	MapMan:35.1	EMBL:AM440167	ProteinID:CAN71816
ProteinID:CAN71816.1	ProteinID:CBI39600	ProteinID:CBI39600.3	UniProt:D7UA36	EMBL:FN596746	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
InterPro:IPR002885	InterPro:IPR011990	EntrezGene:LOC100261266	wikigene:LOC100261266	PFAM:PF01535	PFAM:PF13812
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1651	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI00015C9FF9	ArrayExpress:VIT_14s0060g01120	EnsemblPlantsGene:VIT_14s0060g01120	EnsemblPlants:VIT_14s0060g01120.t01	RefSeq:XP_002277733
RefSeq:XP_002277733.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr14:-:852204..855754

Molecular Weight (calculated)

57409.1 Da

IEP (calculated)

8.215

GRAVY (calculated)

-0.488

Length

498 amino acids

Sequence
(BLAST)

001: MASNTSRLVL MRSVATPRWF STATATAAKD KEASLYWKLS ALRGTEGDVA ETLDKWVKEG KSVKRFDMIS CVNQLRRFKK YKHAAQIYEW MEKSKNDLNN
101: ADRAIRIDLL AKTEGIAQAE NYFNSLQESA KTNKTYGALL NCYCKENMLD KAVELFKKLK ELNFVSSALS YNNMISLYLR VGQPEKVPSL VHEMEEKDIP
201: ADLYTYNLLM NSYASVKDFE AVEQVLDKMK KRGVERDWFT YGNLANIYVD AGHTKKANYA LQKLEQNKNL HDPEAFRMLI NLYARTSNLE GVNRAWESLK
301: LAHPKINNKS YLIMLLALSK LGDVAGLEKC FKEWESGCST YDVRLSNVML ESYLNREIIE EANLLSESIA KRGPELKLKT LDLFMKFYLK KHQLDLAMKY
401: LDMGASKADP ENNKWFPTEE TITMFLEYFE EVKDVDSAEK FCETMRKISR LDSKIYDSLL RTYIAAGKEE PLMSERMKDD GIEISSETEK LLQKVCPK

Best Arabidopsis Sequence Match ( AT1G02370.1 )
(BLAST)

001: MNFRNLIASG SRLGKRFCAT VFAPASATGI VEASVSSPAA ANVVEASVSS PAAENGVRTS VAAPTVASRQ RELYKKLSML SVTGGTVAET LNQFIMEGIT
101: VRKDDLFRCA KTLRKFRRPQ HAFEIFDWME KRKMTFSVSD HAICLDLIGK TKGLEAAENY FNNLDPSAKN HQSTYGALMN CYCVELEEEK AKAHFEIMDE
201: LNFVNNSLPF NNMMSMYMRL SQPEKVPVLV DAMKQRGISP CGVTYSIWMQ SCGSLNDLDG LEKIIDEMGK DSEAKTTWNT FSNLAAIYTK AGLYEKADSA
301: LKSMEEKMNP NNRDSHHFLM SLYAGISKGP EVYRVWESLK KARPEVNNLS YLVMLQAMSK LGDLDGIKKI FTEWESKCWA YDMRLANIAI NTYLKGNMYE
401: EAEKILDGAM KKSKGPFSKA RQLLMIHLLE NDKADLAMKH LEAAVSDSAE NKDEWGWSSE LVSLFFLHFE KAKDVDGAED FCKILSNWKP LDSETMTFLI
501: KTYAAAEKTS PDMRERLSQQ QIEVSEEIQD LLKTVCP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g02370, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ24]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.