Factsheet for HORVU6Hr1G016360.7

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
TargetP:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G118900.1	Wheat	cytosol	73.2	87.98
TraesCS6A01G090800.2	Wheat	mitochondrion	84.2	87.34
HORVU6Hr1G016390.10	Barley	plastid	72.2	64.93
VIT_07s0005g01630.t01	Wine grape	mitochondrion	33.0	34.96
PGSC0003DMT400023279	Potato	mitochondrion	32.8	33.13
KRH69203	Soybean	cytosol	25.2	32.39
VIT_14s0060g01120.t01	Wine grape	cytosol, mitochondrion	31.4	31.53
KRH31780	Soybean	mitochondrion	29.4	30.88
Solyc01g079320.2.1	Tomato	cytosol, mitochondrion	29.4	30.31
Bra000902.1-P	Field mustard	mitochondrion	30.2	30.14
CDX90962	Canola	mitochondrion	30.2	30.14
CDX91822	Canola	mitochondrion	30.0	30.0
AT4G01990.1	Thale cress	mitochondrion	30.0	29.88
HORVU2Hr1G120330.4	Barley	endoplasmic reticulum, extracellular	29.6	29.54
Bra033321.1-P	Field mustard	mitochondrion	30.2	29.32
CDY15237	Canola	mitochondrion	29.8	29.04
CDX89976	Canola	mitochondrion	29.8	28.93
HORVU7Hr1G011310.1	Barley	cytosol, mitochondrion, nucleus	31.6	28.68
Solyc01g100580.2.1	Tomato	mitochondrion	27.4	28.42
PGSC0003DMT400007271	Potato	mitochondrion	27.2	28.16
AT1G02370.1	Thale cress	mitochondrion	29.4	27.37
HORVU1Hr1G045170.4	Barley	cytosol, mitochondrion, nucleus, plastid	27.6	26.59
HORVU2Hr1G093220.7	Barley	mitochondrion	27.0	25.76
HORVU5Hr1G027150.1	Barley	mitochondrion	24.0	23.35
HORVU2Hr1G079080.2	Barley	cytosol	12.4	22.55
HORVU6Hr1G085430.2	Barley	mitochondrion	22.4	21.17
HORVU3Hr1G070650.1	Barley	cytosol	5.8	20.0
HORVU1Hr1G085940.2	Barley	cytosol	6.6	19.41
HORVU3Hr1G040710.1	Barley	mitochondrion	20.0	16.34
HORVU7Hr1G066420.6	Barley	plastid	16.4	15.59

Protein Annotations

EnsemblPlants:HORVU6Hr1G016360.7	EnsemblPlantsGene:HORVU6Hr1G016360	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF942
PFAM:PF01535	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	UniParc:UPI000B4820DE
UniProt:A0A287TFI8	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chrchr6H:-:36809654..36812236

Molecular Weight (calculated)

56989.7 Da

IEP (calculated)

8.847

GRAVY (calculated)

-0.340

Length

500 amino acids

Sequence
(BLAST)

001: EGLFGSSGQP SMLRRAVAAA ARRRISVAPA RLAHELAQPQ AQSAGPERRG LEPAWVPLYK RISKVSQGKP PGTVAAEMDE WLRQRRRPSQ LQVLAYVREL
101: TRFKKNESAL ELLDWMESRG ANLSPGHQAM RLDLISKVHG IQAAEEYFWS IPDISKSVKT YSCLLNCYGK HRLAYKGLEF YEKMKAKSIV PDKLVYNYLM
201: ILYQKAGQPE KILSTFEEMR ESGISADKFA YFTLIESYIT MNDLDAAEKV LAELQKVAPV HWSLYTLMAN NYIKLKLFGK AEVAIKKAEE GMDKADLRSW
301: YALLSLHAHC GNSTEVKRVW KSLKSTFKKC LNRSYLVMLQ ALSMIDDFES LQQIFQEWQS SHEHYDKRIA NVVIKAYLDK GMIDEAEAIR QSTMAQGHWH
401: EGMVCIFAEF YLDKSDVNAA LEILRDAKNM VMARKWVPSK ELVSRFLKHY EESNDASGAE SFLECLKKLE CLDLDAFEAA KQTYVVAGRA SDDEIAKKSF

Best Arabidopsis Sequence Match ( AT1G02150.1 )
(BLAST)

001: MLLQAAVQNR NVPLASSASY SRLLRCRSPV VSVAALSKKT AAIVCSISQV YGYGTVDYER RPIVQWNAIY KKISLMEKPE LGAASVLNQW EKAGRKLTKW
101: ELCRVVKELR KYKRANQALE VYDWMNNRGE RFRLSASDAA IQLDLIGKVR GIPDAEEFFL QLPENFKDRR VYGSLLNAYV RAKSREKAEA LLNTMRDKGY
201: ALHPLPFNVM MTLYMNLREY DKVDAMVFEM KQKDIRLDIY SYNIWLSSCG SLGSVEKMEL VYQQMKSDVS IYPNWTTFST MATMYIKMGE TEKAEDALRK
301: VEARITGRNR IPYHYLLSLY GSLGNKKELY RVWHVYKSVV PSIPNLGYHA LVSSLVRMGD IEGAEKVYEE WLPVKSSYDP RIPNLLMNAY VKNDQLETAE
401: GLFDHMVEMG GKPSSSTWEI LAVGHTRKRC ISEALTCLRN AFSAEGSSNW RPKVLMLSGF FKLCEEESDV TSKEAVLELL RQSGDLEDKS YLALIDVDEN
501: RTVNNSEIDA HETDALLTQL QDDL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g02150 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPS6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.