Factsheet for HORVU2Hr1G093220.7

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	mitochondrion
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G391600.1	Wheat	plastid	92.56	96.42
TraesCS2B01G410100.1	Wheat	plastid	93.13	96.06
TraesCS2D01G389900.1	Wheat	plastid	92.37	94.72
Os04t0544400-00	Rice	plastid	80.34	82.39
EES12592	Sorghum	plastid	77.1	78.45
Zm00001d002789_P001	Maize	plastid	76.14	77.78
GSMUA_AchrUn_...	Banana	cytosol	40.65	57.1
VIT_15s0021g01300.t01	Wine grape	plastid	43.32	43.07
PGSC0003DMT400080049	Potato	cytosol, plastid	41.98	40.37
AT1G02150.1	Thale cress	mitochondrion	40.08	40.08
CDY15126	Canola	cytosol, mitochondrion, plastid	39.12	40.04
KRH48889	Soybean	plastid	41.6	39.93
Bra033215.1-P	Field mustard	mitochondrion	38.93	39.84
CDX90079	Canola	mitochondrion	38.93	39.84
KRH66454	Soybean	plastid	42.18	39.82
Solyc01g089870.2.1	Tomato	nucleus	41.41	39.82
HORVU5Hr1G027150.1	Barley	mitochondrion	29.01	29.57
HORVU7Hr1G011310.1	Barley	cytosol, mitochondrion, nucleus	29.77	28.31
HORVU1Hr1G045170.4	Barley	cytosol, mitochondrion, nucleus, plastid	27.86	28.13
HORVU6Hr1G016360.7	Barley	mitochondrion	25.76	27.0
HORVU6Hr1G085430.2	Barley	mitochondrion	25.95	25.71
HORVU2Hr1G120330.4	Barley	endoplasmic reticulum, extracellular	24.24	25.35
HORVU6Hr1G016390.10	Barley	plastid	26.53	25.0
HORVU3Hr1G070650.1	Barley	cytosol	6.87	24.83
HORVU2Hr1G079080.2	Barley	cytosol	12.21	23.27
HORVU1Hr1G085940.2	Barley	cytosol	6.87	21.18
HORVU3Hr1G040710.1	Barley	mitochondrion	21.76	18.63
HORVU7Hr1G066420.6	Barley	plastid	18.13	18.06

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A287IZ24	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	EnsemblPlantsGene:HORVU2Hr1G093220	EnsemblPlants:HORVU2Hr1G093220.7
InterPro:IPR002885	InterPro:IPR011990	InterPro:IPR019734	PFAM:PF01535	PFAM:PF13181	PFAM:PF13812
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF27	InterPro:Pentatricopeptide_repeat	SMART:SM00028	SUPFAM:SSF48452
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI000B47CE99	SEG:seg	:

Description

No Description!

Coordinates

chrchr2H:-:657561494..657564910

Molecular Weight (calculated)

59771.3 Da

IEP (calculated)

9.156

GRAVY (calculated)

-0.504

Length

524 amino acids

Sequence
(BLAST)

001: PLPPLALPTR TRRSTAGAAM LLHHLLPPSS RAPPRPSPRR PGGGALTVRC APSSAPSPSS ASAGQQVANV HSYGTVDFER RPALRWSSLY RRVAVGHGGR
101: PVGRTLADWD EGERRLDKWE LCRIARELRK FRRFNLALEV YDWMTDRRDR FSLSSSDMAI QLDLIAKVRG VPDAEEYFEK LPDPLKDKRT YGSLLNVYAQ
201: ARMKEKTEYT FEQMRKKGFA TDTLPFNVLM NFYVDVAEPE KVSTVTDEMK QRNISFDVCT YNIWIKCCAA MKDADAMERV LNQMTADESV VANWTTYTTL
301: ASMHIKLENF EKAEECLKEA EKRATGRDKK CFHFLITLYS HLQKKEEVYR IWNWYKATFK TIHNLGYQEV LSALVRLGDI EGAELLYEEW ASKSSSFDPK
401: TMNILLAWYS REGFVVKAQQ TLNRFVEKGG NPKPNTWEIL ATAYLKDNQL SEALSCLEKA TAVKSASKWR PRPTNVETLL AYFKEKNDTE SVDRLMSVLR
501: SRGCAENEEY KSLIDTYALA VAGT

Best Arabidopsis Sequence Match ( AT1G02150.1 )
(BLAST)

001: MLLQAAVQNR NVPLASSASY SRLLRCRSPV VSVAALSKKT AAIVCSISQV YGYGTVDYER RPIVQWNAIY KKISLMEKPE LGAASVLNQW EKAGRKLTKW
101: ELCRVVKELR KYKRANQALE VYDWMNNRGE RFRLSASDAA IQLDLIGKVR GIPDAEEFFL QLPENFKDRR VYGSLLNAYV RAKSREKAEA LLNTMRDKGY
201: ALHPLPFNVM MTLYMNLREY DKVDAMVFEM KQKDIRLDIY SYNIWLSSCG SLGSVEKMEL VYQQMKSDVS IYPNWTTFST MATMYIKMGE TEKAEDALRK
301: VEARITGRNR IPYHYLLSLY GSLGNKKELY RVWHVYKSVV PSIPNLGYHA LVSSLVRMGD IEGAEKVYEE WLPVKSSYDP RIPNLLMNAY VKNDQLETAE
401: GLFDHMVEMG GKPSSSTWEI LAVGHTRKRC ISEALTCLRN AFSAEGSSNW RPKVLMLSGF FKLCEEESDV TSKEAVLELL RQSGDLEDKS YLALIDVDEN
501: RTVNNSEIDA HETDALLTQL QDDL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g02150 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPS6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.