CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48889	Soybean	plastid	89.19	90.66
VIT_15s0021g01300.t01	Wine grape	plastid	58.02	61.1
Bra033215.1-P	Field mustard	mitochondrion	53.69	58.2
CDY15126	Canola	cytosol, mitochondrion, plastid	53.69	58.2
CDX90079	Canola	mitochondrion	53.51	58.01
Solyc01g089870.2.1	Tomato	nucleus	56.76	57.8
AT1G02150.1	Thale cress	mitochondrion	54.41	57.63
PGSC0003DMT400080049	Potato	cytosol, plastid	56.22	57.25
GSMUA_AchrUn_...	Banana	cytosol	35.14	52.28
Os04t0544400-00	Rice	plastid	40.9	44.42
TraesCS2A01G391600.1	Wheat	plastid	39.1	43.14
EES12592	Sorghum	plastid	40.0	43.11
TraesCS2D01G389900.1	Wheat	plastid	39.64	43.05
TraesCS2B01G410100.1	Wheat	plastid	39.1	42.72
Zm00001d002789_P001	Maize	plastid	39.46	42.69
HORVU2Hr1G093220.7	Barley	mitochondrion	39.82	42.18
KRH69203	Soybean	cytosol	22.88	32.65
KRH31780	Soybean	mitochondrion	27.57	32.14
KRH10858	Soybean	mitochondrion	27.57	31.48
KRH22399	Soybean	cytosol	25.77	30.04
KRH45616	Soybean	nucleus	26.49	30.0
KRH26940	Soybean	cytosol	26.49	29.64
KRH55328	Soybean	plastid	25.41	28.66
KRH52991	Soybean	mitochondrion	24.5	27.42
KRG99413	Soybean	cytosol, mitochondrion	16.76	26.5
KRH43872	Soybean	mitochondrion	18.56	26.08
KRH10583	Soybean	mitochondrion	18.74	26.07
KRH62276	Soybean	mitochondrion	24.86	24.0
KRH66764	Soybean	cytosol	17.66	23.61
KRH23068	Soybean	mitochondrion	18.92	20.71
KRH10262	Soybean	mitochondrion	18.56	20.32
KRH69049	Soybean	mitochondrion	21.26	19.38
KRG95098	Soybean	mitochondrion	20.9	19.02
KRH31614	Soybean	mitochondrion	20.0	18.5

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100780408	MapMan:35.1	EMBL:ACUP02001966	ncoils:Coil	EnsemblPlantsGene:GLYMA_03G108100
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231
GO:GO:0090305	UniProt:I1JMN3	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:KRH66454	ProteinID:KRH66454
ProteinID:KRH66454.1	PFAM:PF01535	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF27
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00023376A1	SEG:seg

Description

hypothetical protein

Coordinates

chr3:-:30858539..30862633

Molecular Weight (calculated)

63738.8 Da

IEP (calculated)

6.751

GRAVY (calculated)

-0.436

Length

555 amino acids

Sequence
(BLAST)

001: MSLLQIQSSP HNQTLLSLSF SSSLSHSSSL HFNHSSSSST TLTHAHTCFH PRLSVVTCSI SNIHSYGTVD YERRPIVRWN DVYRRISLNQ NPQVGSAEVL
101: NQWENEGRHL TKWELSRVVK ELRKYKRFPR ALEVYDWMNN RPERFRVSES DAAIQLDLIA KVRGVSSAEA FFLSLEDKLK DKRTYGALLN VYVHSRSKEK
201: AESLFDTMRS KGYVIHALPI NVMMTLYMNL NEYAKVDMLA SEMMEKNIQL DIYTYNIWLS SCGSQGSVEK MEQVFEQMER DPTIVPNWST FSTLASMYIR
301: MNQNEKAEKC LRKVEGRIKG RDRIPFHYLL SLYGSVGKKD EVYRVWNTYK SIFPRIPNLG YHAIISSLVK LDDIEGAEKL YEEWISVKSS YDPRIGNLLM
401: GWYVKKDDTD KALSFFEQIS NDGCIPNSNT WEILSEGHIA DKRISEALSC LKEAFMVAGG SKSWRPKPSY LSAFLELCQE QNDMESAEVL IGLLRQSKFS
501: KIKVYASIIG SPDCTIDNGE LQSKIDITDR TDDAVDSENM DDDSQMLLNQ LDSRF

Best Arabidopsis Sequence Match ( AT1G02150.1 )
(BLAST)

001: MLLQAAVQNR NVPLASSASY SRLLRCRSPV VSVAALSKKT AAIVCSISQV YGYGTVDYER RPIVQWNAIY KKISLMEKPE LGAASVLNQW EKAGRKLTKW
101: ELCRVVKELR KYKRANQALE VYDWMNNRGE RFRLSASDAA IQLDLIGKVR GIPDAEEFFL QLPENFKDRR VYGSLLNAYV RAKSREKAEA LLNTMRDKGY
201: ALHPLPFNVM MTLYMNLREY DKVDAMVFEM KQKDIRLDIY SYNIWLSSCG SLGSVEKMEL VYQQMKSDVS IYPNWTTFST MATMYIKMGE TEKAEDALRK
301: VEARITGRNR IPYHYLLSLY GSLGNKKELY RVWHVYKSVV PSIPNLGYHA LVSSLVRMGD IEGAEKVYEE WLPVKSSYDP RIPNLLMNAY VKNDQLETAE
401: GLFDHMVEMG GKPSSSTWEI LAVGHTRKRC ISEALTCLRN AFSAEGSSNW RPKVLMLSGF FKLCEEESDV TSKEAVLELL RQSGDLEDKS YLALIDVDEN
501: RTVNNSEIDA HETDALLTQL QDDL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g02150 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPS6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.