Factsheet for Os04t0544400-00

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G391600.1	Wheat	plastid	82.39	83.7
EES12592	Sorghum	plastid	84.34	83.69
TraesCS2B01G410100.1	Wheat	plastid	82.19	82.68
TraesCS2D01G389900.1	Wheat	plastid	82.19	82.19
Zm00001d002789_P001	Maize	plastid	82.0	81.68
HORVU2Hr1G093220.7	Barley	mitochondrion	82.39	80.34
GSMUA_AchrUn_...	Banana	cytosol	41.68	57.1
VIT_15s0021g01300.t01	Wine grape	plastid	45.4	44.02
KRH66454	Soybean	plastid	44.42	40.9
KRH48889	Soybean	plastid	43.64	40.84
Bra033215.1-P	Field mustard	mitochondrion	40.7	40.62
CDX90079	Canola	mitochondrion	40.7	40.62
AT1G02150.1	Thale cress	mitochondrion	41.49	40.46
CDY15126	Canola	cytosol, mitochondrion, plastid	40.51	40.43
PGSC0003DMT400080049	Potato	cytosol, plastid	42.86	40.18
Solyc01g089870.2.1	Tomato	nucleus	42.47	39.82
Os12t0527900-01	Rice	mitochondrion	30.92	30.74
Os07t0598500-01	Rice	mitochondrion	28.57	28.85
Os01t0301000-01	Rice	mitochondrion	29.35	28.74
Os10t0501000-01	Rice	cytosol	25.05	28.38
Os10t0501300-01	Rice	mitochondrion	28.38	28.27
Os04t0320200-01	Rice	mitochondrion	28.57	27.86
Os01t0301500-01	Rice	cytosol, mitochondrion	25.83	27.27
Os02t0796400-00	Rice	mitochondrion	27.4	27.08
Os04t0450200-01	Rice	cytosol	15.26	26.71
Os01t0301700-01	Rice	mitochondrion	25.44	25.79
Os10t0501200-00	Rice	mitochondrion	29.94	24.44
Os01t0280400-00	Rice	mitochondrion	21.92	18.33
Os12t0170100-01	Rice	mitochondrion	20.94	17.51
Os07t0222700-01	Rice	mitochondrion	2.35	6.06

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	ProteinID:BAS90324.1	ProteinID:CAE04345.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003729	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694
GO:GO:0005737	GO:GO:0006139	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168
GO:GO:0008270	GO:GO:0009451	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016043
GO:GO:0016571	GO:GO:0016740	GO:GO:0016787	GO:GO:0018024	GO:GO:0019538	GO:GO:0032259
GO:GO:0034968	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	InterPro:IPR019734
EnsemblPlantsGene:Os04g0544400	EnsemblPlants:Os04t0544400-00	PFAM:PF01535	PFAM:PF13181	PFAM:PF13812	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF27	InterPro:Pentatricopeptide_repeat	UniProt:Q7XN02	SUPFAM:SSF48452	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI00001B17B3	SEG:seg	:	:

Description

Hypothetical conserved gene. (Os04t0544400-00)

Coordinates

chr4:-:27256445..27258940

Molecular Weight (calculated)

58012.8 Da

IEP (calculated)

8.036

GRAVY (calculated)

-0.504

Length

511 amino acids

Sequence
(BLAST)

001: MLLHILGSST LAPARPSPLR QSGAGTGAAT VRCASSSSNP SPSSSSSAAA AAGKQVAKVH SYGALDYERR AALRWSSLYR RIAVGHGGRP VGRTLGAWDE
101: GERRLDKWEL CRIARELRKF RRFNLALQVY DWMTERRDRF SLSSSDMAIQ LDLIAKVRGV SHAEEYFEEL PDPLKDKRTY GSLLNVYAQA MMKEKTESTF
201: EQMRKKGFAT DTLPFNVLMN FYVDAEEAEK VSILIDEMME RNVAFDVCTY NIWIKSCAAM QDADAMEQVF NQMIRDETVV ANWTTYTTLA SMHIKLGNSE
301: KAEESLKEAE KRTTGREKKC FHYLMTLYSH LGKKEEVYRV WNWYKATFPT IHNLGYQEVL SALVRLGDIE GAELLYEEWA SKSSSFDPKT MNILLAWYAR
401: EGFVTKAEQT LNRFVEKGGN PKPNTWEILG TAYLKDGQSS EALSCLEKAT AVASPSKWRP RPTNVESLLA NFKEKNDAES ADRLMNVLRS RRCEENEEYK
501: SLINTYAFQD T

Best Arabidopsis Sequence Match ( AT1G02150.1 )
(BLAST)

001: MLLQAAVQNR NVPLASSASY SRLLRCRSPV VSVAALSKKT AAIVCSISQV YGYGTVDYER RPIVQWNAIY KKISLMEKPE LGAASVLNQW EKAGRKLTKW
101: ELCRVVKELR KYKRANQALE VYDWMNNRGE RFRLSASDAA IQLDLIGKVR GIPDAEEFFL QLPENFKDRR VYGSLLNAYV RAKSREKAEA LLNTMRDKGY
201: ALHPLPFNVM MTLYMNLREY DKVDAMVFEM KQKDIRLDIY SYNIWLSSCG SLGSVEKMEL VYQQMKSDVS IYPNWTTFST MATMYIKMGE TEKAEDALRK
301: VEARITGRNR IPYHYLLSLY GSLGNKKELY RVWHVYKSVV PSIPNLGYHA LVSSLVRMGD IEGAEKVYEE WLPVKSSYDP RIPNLLMNAY VKNDQLETAE
401: GLFDHMVEMG GKPSSSTWEI LAVGHTRKRC ISEALTCLRN AFSAEGSSNW RPKVLMLSGF FKLCEEESDV TSKEAVLELL RQSGDLEDKS YLALIDVDEN
501: RTVNNSEIDA HETDALLTQL QDDL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g02150 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPS6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.