Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0186400-01 | |
| Os04t0550400-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G09450.1 | Os04t0550400-01 | AT2G44950.1 | 21798944 |
| AT5G09450.1 | Os02t0186400-01 | AT4G32190.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G070650.1 | Barley | cytosol | 37.67 | 75.86 |
| HORVU2Hr1G079080.2 | Barley | cytosol | 67.81 | 72.0 |
| HORVU1Hr1G085940.2 | Barley | cytosol | 37.33 | 64.12 |
| EES10908 | Sorghum | mitochondrion | 85.62 | 60.24 |
| TraesCS2A01G318100.1 | Wheat | mitochondrion | 84.59 | 58.95 |
| TraesCS2B01G336200.1 | Wheat | mitochondrion | 83.22 | 58.0 |
| TraesCS2D01G315700.1 | Wheat | mitochondrion | 83.22 | 55.1 |
| Zm00001d003500_P001 | Maize | mitochondrion | 76.71 | 52.96 |
| VIT_11s0078g00180.t01 | Wine grape | cytosol | 31.51 | 48.17 |
| GSMUA_Achr10P... | Banana | cytosol | 61.99 | 41.04 |
| PGSC0003DMT400011461 | Potato | mitochondrion | 52.74 | 38.5 |
| KRH43872 | Soybean | mitochondrion | 52.05 | 38.48 |
| Solyc10g047370.1.1 | Tomato | mitochondrion | 52.05 | 38.1 |
| KRH10583 | Soybean | mitochondrion | 51.37 | 37.59 |
| AT5G09450.1 | Thale cress | mitochondrion | 49.66 | 35.45 |
| CDY44801 | Canola | mitochondrion | 48.97 | 35.4 |
| Bra028632.1-P | Field mustard | mitochondrion | 48.63 | 35.15 |
| Os12t0527900-01 | Rice | mitochondrion | 29.79 | 16.93 |
| Os04t0320200-01 | Rice | mitochondrion | 28.42 | 15.84 |
| Os01t0301000-01 | Rice | mitochondrion | 27.74 | 15.52 |
| Os04t0544400-00 | Rice | plastid | 26.71 | 15.26 |
| Os07t0598500-01 | Rice | mitochondrion | 25.68 | 14.82 |
| Os02t0796400-00 | Rice | mitochondrion | 26.03 | 14.7 |
| Os01t0301700-01 | Rice | mitochondrion | 24.66 | 14.29 |
| Os01t0301500-01 | Rice | cytosol, mitochondrion | 22.95 | 13.84 |
| Os10t0501300-01 | Rice | mitochondrion | 23.97 | 13.65 |
| Os10t0501000-01 | Rice | cytosol | 18.49 | 11.97 |
| Os10t0501200-00 | Rice | mitochondrion | 23.29 | 10.86 |
| Os12t0170100-01 | Rice | mitochondrion | 21.23 | 10.15 |
| Os01t0280400-00 | Rice | mitochondrion | 20.89 | 9.98 |
| Os07t0222700-01 | Rice | mitochondrion | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | ProteinID:BAF14851.1 | ProteinID:BAS89451.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004519 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009451 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0043231 | GO:GO:0090305 | InterPro:IPR002885 |
| InterPro:IPR011990 | EnsemblPlantsGene:Os04g0450200 | EnsemblPlants:Os04t0450200-01 | PFAM:PF01535 | PFscan:PS51375 | PANTHER:PTHR24015 |
| PANTHER:PTHR24015:SF504 | InterPro:Pentatricopeptide_repeat | UniProt:Q0JCT6 | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI0000DD90E0 |
Description
Pentatricopeptide repeat containing protein. (Os04t0450200-01)
Coordinates
chr4:+:22433781..22434743
Molecular Weight (calculated)
33239.8 Da
IEP (calculated)
5.094
GRAVY (calculated)
-0.260
Length
292 amino acids
Sequence
(BLAST)
(BLAST)
001: ESDLSENDYG MRIDLITRVF GANAAEDFFE KLPACVQSLE AYTALLHSYA RSKMTDKAER LFKRMKDANL SMNILVYNEM MTLYISVGEL DKVPVIAEEL
101: KRQKFSPDLF TYNLRISASA ASMDLEGFKG ILDEMSKDPN SNEGWKLYQN LAVIYVDAGQ LVGSGNSLVE AEAKISRREW ITYDFLVILH TGLGNRDRIK
201: DIWKSMLMTS QRMTSRNYIC VLSSYLMCGQ LKDAGEVIDQ WQRSKAPEFD ISACNRLFDA FLNAGFTDTA NSFRELMLQK SCILTSRQER SS
101: KRQKFSPDLF TYNLRISASA ASMDLEGFKG ILDEMSKDPN SNEGWKLYQN LAVIYVDAGQ LVGSGNSLVE AEAKISRREW ITYDFLVILH TGLGNRDRIK
201: DIWKSMLMTS QRMTSRNYIC VLSSYLMCGQ LKDAGEVIDQ WQRSKAPEFD ISACNRLFDA FLNAGFTDTA NSFRELMLQK SCILTSRQER SS
001: MATRSLFHSL RCRLTNNGVL GSNFIRNAES SRFSKSYNAD AAIGNSLVEE SEEKDDLKSR IFRLRLPKRS ATTVLEKWIG EGNQMTINEL REISKELRRT
101: RRYKHALEVT EWMVQHEESK ISDADYASRI DLISKVFGID AAERYFEGLD IDSKTAETYT SLLHAYAASK QTERAEALFK RIIESDSLTF GAITYNEMMT
201: LYMSVGQVEK VPEVIEVLKQ KKVSPDIFTY NLWLSSCAAT FNIDELRKIL EEMRHDASSN EGWVRYIDLT SIYINSSRVT NAESTLPVEA EKSISQREWI
301: TYDFLMILHT GLGNKVMIDQ IWKSLRNTNQ ILSSRSYICV LSSYLMLGHL REAEEIIHQW KESKTTEFDA SACLRILNAF RDVGLEGIAS GFHLILVHNK
401: CSLENEGSS
101: RRYKHALEVT EWMVQHEESK ISDADYASRI DLISKVFGID AAERYFEGLD IDSKTAETYT SLLHAYAASK QTERAEALFK RIIESDSLTF GAITYNEMMT
201: LYMSVGQVEK VPEVIEVLKQ KKVSPDIFTY NLWLSSCAAT FNIDELRKIL EEMRHDASSN EGWVRYIDLT SIYINSSRVT NAESTLPVEA EKSISQREWI
301: TYDFLMILHT GLGNKVMIDQ IWKSLRNTNQ ILSSRSYICV LSSYLMLGHL REAEEIIHQW KESKTTEFDA SACLRILNAF RDVGLEGIAS GFHLILVHNK
401: CSLENEGSS
Arabidopsis Description
Pentatricopeptide repeat-containing protein At5g09450, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q94B59]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.