Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_04s0008g05610.t01 | |
| VIT_15s0021g02140.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G09450.1 | VIT_15s0021g02140.t01 | AT2G44950.1 | 21798944 |
| AT5G09450.1 | VIT_04s0008g05610.t01 | AT4G32190.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G070650.1 | Barley | cytosol | 27.23 | 35.86 |
| KRH10583 | Soybean | mitochondrion | 69.63 | 33.33 |
| KRH43872 | Soybean | mitochondrion | 68.06 | 32.91 |
| Os04t0450200-01 | Rice | cytosol | 48.17 | 31.51 |
| PGSC0003DMT400011461 | Potato | mitochondrion | 63.87 | 30.5 |
| Solyc10g047370.1.1 | Tomato | mitochondrion | 62.83 | 30.08 |
| HORVU1Hr1G085940.2 | Barley | cytosol | 26.7 | 30.0 |
| AT5G09450.1 | Thale cress | mitochondrion | 57.59 | 26.89 |
| GSMUA_Achr10P... | Banana | cytosol | 58.64 | 25.4 |
| Bra028632.1-P | Field mustard | mitochondrion | 52.88 | 25.0 |
| CDY44801 | Canola | mitochondrion | 52.88 | 25.0 |
| TraesCS2A01G318100.1 | Wheat | mitochondrion | 50.26 | 22.91 |
| EES10908 | Sorghum | mitochondrion | 49.74 | 22.89 |
| TraesCS2B01G336200.1 | Wheat | mitochondrion | 49.21 | 22.43 |
| TraesCS2D01G315700.1 | Wheat | mitochondrion | 50.79 | 22.0 |
| Zm00001d003500_P001 | Maize | mitochondrion | 48.17 | 21.75 |
| HORVU2Hr1G079080.2 | Barley | cytosol | 30.89 | 21.45 |
| VIT_00s0394g00020.t01 | Wine grape | cytosol | 37.7 | 14.72 |
| VIT_07s0005g01630.t01 | Wine grape | mitochondrion | 35.6 | 14.41 |
| VIT_14s0060g01120.t01 | Wine grape | cytosol, mitochondrion | 36.65 | 14.06 |
| VIT_10s0597g00040.t01 | Wine grape | extracellular | 37.17 | 14.03 |
| VIT_16s0039g02800.t01 | Wine grape | cytosol | 36.13 | 13.86 |
| VIT_19s0014g02920.t01 | Wine grape | mitochondrion, plastid | 32.98 | 12.5 |
| VIT_18s0001g07000.t01 | Wine grape | mitochondrion | 29.84 | 11.35 |
| VIT_15s0021g01300.t01 | Wine grape | plastid | 30.89 | 11.2 |
| VIT_12s0028g03870.t01 | Wine grape | cytosol, mitochondrion | 28.8 | 11.02 |
| VIT_12s0028g03880.t01 | Wine grape | cytosol, mitochondrion | 28.27 | 10.78 |
| VIT_08s0007g05090.t01 | Wine grape | mitochondrion | 26.18 | 8.01 |
| VIT_06s0004g04690.t01 | Wine grape | mitochondrion | 19.9 | 7.22 |
Protein Annotations
| ArrayExpress:VIT_11s0078g00180 | EMBL:FN596757 | EnsemblPlants:VIT_11s0078g00180.t01 | EnsemblPlantsGene:VIT_11s0078g00180 | Gene3D:1.25.40.10 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf |
| PANTHER:PTHR24015 | PANTHER:PTHR24015:SF504 | PFAM:PF13812 | PFscan:PS51375 | ProteinID:CCB62608 | ProteinID:CCB62608.1 |
| SEG:seg | TIGRFAMs:TIGR00756 | UniParc:UPI000210AB92 | UniProt:F6I6P0 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr11:+:12261386..12263844
Molecular Weight (calculated)
21927.2 Da
IEP (calculated)
4.605
GRAVY (calculated)
-0.163
Length
191 amino acids
Sequence
(BLAST)
(BLAST)
001: METTTLVVIS EWMVSHDEFE LSDSDNAVRI DLMTRVFGID AAERYFEGLP SAAKTSETYT ALLHSYAGAK LAEKAEELYE RIKESNVPLN ILLYNEMMTL
101: YMSVGQVEKV SLVVEELKRQ KVVPDLFTYN LWVSSCAATL DIDGVRRILK EMSNNSSAND GWVRYRNLAN IYIMADYSKC PWLLERWKLQ S
101: YMSVGQVEKV SLVVEELKRQ KVVPDLFTYN LWVSSCAATL DIDGVRRILK EMSNNSSAND GWVRYRNLAN IYIMADYSKC PWLLERWKLQ S
001: MATRSLFHSL RCRLTNNGVL GSNFIRNAES SRFSKSYNAD AAIGNSLVEE SEEKDDLKSR IFRLRLPKRS ATTVLEKWIG EGNQMTINEL REISKELRRT
101: RRYKHALEVT EWMVQHEESK ISDADYASRI DLISKVFGID AAERYFEGLD IDSKTAETYT SLLHAYAASK QTERAEALFK RIIESDSLTF GAITYNEMMT
201: LYMSVGQVEK VPEVIEVLKQ KKVSPDIFTY NLWLSSCAAT FNIDELRKIL EEMRHDASSN EGWVRYIDLT SIYINSSRVT NAESTLPVEA EKSISQREWI
301: TYDFLMILHT GLGNKVMIDQ IWKSLRNTNQ ILSSRSYICV LSSYLMLGHL REAEEIIHQW KESKTTEFDA SACLRILNAF RDVGLEGIAS GFHLILVHNK
401: CSLENEGSS
101: RRYKHALEVT EWMVQHEESK ISDADYASRI DLISKVFGID AAERYFEGLD IDSKTAETYT SLLHAYAASK QTERAEALFK RIIESDSLTF GAITYNEMMT
201: LYMSVGQVEK VPEVIEVLKQ KKVSPDIFTY NLWLSSCAAT FNIDELRKIL EEMRHDASSN EGWVRYIDLT SIYINSSRVT NAESTLPVEA EKSISQREWI
301: TYDFLMILHT GLGNKVMIDQ IWKSLRNTNQ ILSSRSYICV LSSYLMLGHL REAEEIIHQW KESKTTEFDA SACLRILNAF RDVGLEGIAS GFHLILVHNK
401: CSLENEGSS
Arabidopsis Description
Pentatricopeptide repeat-containing protein At5g09450, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q94B59]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.