Factsheet for TraesCS2B01G336200.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G369300.2
TraesCS3B01G401200.2
TraesCS3D01G362300.2
TraesCS6A01G180500.1
TraesCS6A01G251200.2
TraesCS6B01G274100.2
TraesCS6D01G164600.1
TraesCS6D01G233000.5

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G09450.1	TraesCS3A01G369300.2	AT2G44950.1	21798944
AT5G09450.1	TraesCS3B01G401200.2	AT2G44950.1	21798944
AT5G09450.1	TraesCS3D01G362300.2	AT2G44950.1	21798944
AT5G09450.1	TraesCS6A01G251200.2	AT2G44950.1	21798944
AT5G09450.1	TraesCS6B01G274100.2	AT2G44950.1	21798944
AT5G09450.1	TraesCS6D01G233000.5	AT2G44950.1	21798944
AT5G09450.1	TraesCS6A01G180500.1	AT4G32190.1	21798944
AT5G09450.1	TraesCS6D01G164600.1	AT4G32190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G318100.1	Wheat	mitochondrion	94.99	94.99
TraesCS2D01G315700.1	Wheat	mitochondrion	94.27	89.57
HORVU3Hr1G070650.1	Barley	cytosol	29.12	84.14
HORVU2Hr1G079080.2	Barley	cytosol	55.13	84.0
Os04t0450200-01	Rice	cytosol	58.0	83.22
EES10908	Sorghum	mitochondrion	75.66	76.39
HORVU1Hr1G085940.2	Barley	cytosol	30.07	74.12
Zm00001d003500_P001	Maize	mitochondrion	69.45	68.79
GSMUA_Achr10P...	Banana	cytosol	53.46	50.79
VIT_11s0078g00180.t01	Wine grape	cytosol	22.43	49.21
Bra028632.1-P	Field mustard	mitochondrion	45.11	46.78
CDY44801	Canola	mitochondrion	45.11	46.78
KRH43872	Soybean	mitochondrion	43.68	46.33
KRH10583	Soybean	mitochondrion	43.44	45.61
AT5G09450.1	Thale cress	mitochondrion	44.39	45.48
PGSC0003DMT400011461	Potato	mitochondrion	42.72	44.75
Solyc10g047370.1.1	Tomato	mitochondrion	42.24	44.36
TraesCS6B01G118900.1	Wheat	cytosol	22.67	22.84
TraesCS5B01G104900.1	Wheat	mitochondrion	27.68	22.75
TraesCS6B01G391300.1	Wheat	mitochondrion	25.78	20.93
TraesCS2B01G410100.1	Wheat	plastid	25.06	20.67
TraesCS6B01G119000.1	Wheat	mitochondrion	23.63	20.67
TraesCS2B01G584000.2	Wheat	mitochondrion	26.97	20.43
TraesCS1B01G188100.1	Wheat	mitochondrion	24.82	20.35
TraesCS2B01G583500.1	Wheat	mitochondrion	22.67	19.79
TraesCS6B01G119100.1	Wheat	mitochondrion	22.2	18.79
TraesCS1B01G188200.1	Wheat	mitochondrion	21.72	18.5
TraesCS7B01G189100.1	Wheat	mitochondrion	17.9	14.62
TraesCS3B01G220600.2	Wheat	mitochondrion	19.57	13.38

Protein Annotations

EnsemblPlants:TraesCS2B01G336200.1	EnsemblPlantsGene:TraesCS2B01G336200	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF504
PFAM:PF13812	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756	MapMan:35.1	:

Description

No Description!

Coordinates

chr2B:+:480408514..480411036

Molecular Weight (calculated)

46538.5 Da

IEP (calculated)

5.540

GRAVY (calculated)

-0.188

Length

419 amino acids

Sequence
(BLAST)

001: MAAALLRAAR ASRHLALPRS IVGRSSQLSS SSCTASTAET PSTAAAAPPI PADVEDAVVV EAEEEDLRSH IFRLRLAKRS ATEALEKWAG EGRAAPAPEL
101: RGIARDLSRA RRYKHALEVA EFMKTHHESD LSENDYGVRI DLITKVFGAN AAEDFFEKLP PTAKSLEAYT AFLHSYARSK MIDKAERLFQ RMKDADLPID
201: VLVYNEMMTL YISVGELDKV PTLAEELKRQ NVSPDLFTYN LRISASVASM DLEVFRGILE EMSKDPNSNE GWTLYRNLAS IYVDASQLVS SGNSLVEAEA
301: KISQRDWITY DLLVILHAGL GNLDRVKDIW KSMQMTAQRM TSRNYVCVLS AYLMCGQLKD AAEVVDQWQR SKLPEFDVSA CNRLFDALLA AGFTDTADSF
401: RELMLQKSCI LSSRASACS

Best Arabidopsis Sequence Match ( AT5G09450.1 )
(BLAST)

001: MATRSLFHSL RCRLTNNGVL GSNFIRNAES SRFSKSYNAD AAIGNSLVEE SEEKDDLKSR IFRLRLPKRS ATTVLEKWIG EGNQMTINEL REISKELRRT
101: RRYKHALEVT EWMVQHEESK ISDADYASRI DLISKVFGID AAERYFEGLD IDSKTAETYT SLLHAYAASK QTERAEALFK RIIESDSLTF GAITYNEMMT
201: LYMSVGQVEK VPEVIEVLKQ KKVSPDIFTY NLWLSSCAAT FNIDELRKIL EEMRHDASSN EGWVRYIDLT SIYINSSRVT NAESTLPVEA EKSISQREWI
301: TYDFLMILHT GLGNKVMIDQ IWKSLRNTNQ ILSSRSYICV LSSYLMLGHL REAEEIIHQW KESKTTEFDA SACLRILNAF RDVGLEGIAS GFHLILVHNK
401: CSLENEGSS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g09450, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q94B59]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.