Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G251200.2 | Wheat | nucleus | 98.74 | 98.74 |
| TraesCS6B01G274100.2 | Wheat | nucleus | 97.95 | 97.95 |
| HORVU0Hr1G018210.6 | Barley | nucleus | 92.24 | 92.55 |
| TraesCS3D01G362300.2 | Wheat | nucleus | 86.07 | 86.67 |
| Os04t0550400-01 | Rice | nucleus | 63.58 | 63.01 |
| EER88892 | Sorghum | cytosol | 58.45 | 60.16 |
| Zm00001d014640_P035 | Maize | cytosol | 57.65 | 58.72 |
| GSMUA_Achr4P26970_001 | Banana | nucleus | 25.11 | 57.59 |
| Zm00001d036507_P003 | Maize | cytosol | 55.59 | 55.91 |
| GSMUA_Achr1P01610_001 | Banana | nucleus | 53.88 | 53.58 |
| GSMUA_Achr4P26960_001 | Banana | nucleus | 28.2 | 48.81 |
| VIT_15s0021g02140.t01 | Wine grape | nucleus | 47.6 | 47.49 |
| KRH30315 | Soybean | nucleus | 44.41 | 44.25 |
| Solyc11g013370.1.1 | Tomato | nucleus | 42.58 | 44.04 |
| KRH75261 | Soybean | nucleus | 43.95 | 43.75 |
| AT2G44950.1 | Thale cress | nucleus | 41.78 | 41.69 |
| CDY18962 | Canola | nucleus | 40.64 | 40.78 |
| Bra040332.1-P | Field mustard | nucleus | 40.87 | 40.73 |
| CDY37020 | Canola | nucleus | 40.64 | 40.59 |
| CDX74700 | Canola | nucleus | 40.75 | 40.52 |
| CDY27400 | Canola | nucleus | 39.73 | 39.86 |
| Bra004879.1-P | Field mustard | nucleus | 40.87 | 39.6 |
| TraesCS3D01G465000.1 | Wheat | nucleus | 6.39 | 33.94 |
| TraesCS3D01G462600.5 | Wheat | nucleus | 29.68 | 30.81 |
| TraesCS3D01G466100.1 | Wheat | nucleus | 29.68 | 30.81 |
| TraesCS3D01G465100.1 | Wheat | cytosol | 13.93 | 26.01 |
Protein Annotations
| MapMan:19.2.2.1.5.3.2 | Gene3D:3.30.40.10 | ncoils:Coil | InterPro:E3_ubiquit_lig_Bre1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004842 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010390 |
| GO:GO:0016043 | GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR001841 | InterPro:IPR013083 | PFAM:PF13923 |
| ScanProsite:PS00518 | PFscan:PS50089 | PANTHER:PTHR23163 | PANTHER:PTHR23163:SF3 | SMART:SM00184 | SUPFAM:SSF57850 |
| EnsemblPlantsGene:TraesCS6D01G233000 | EnsemblPlants:TraesCS6D01G233000.5 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | TIGR:cd16499 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr6D:-:327004485..327014890
Molecular Weight (calculated)
99561.7 Da
IEP (calculated)
7.295
GRAVY (calculated)
-0.762
Length
876 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSTGEPDRK RRLSGSFAQG VDAVPPAKRP ALPPSSDDKK LDFAVIKYRN QKLSEQLEVH KSEYHALEGK FDDLKQKQKS HHETQDLVNK SWQHLVRDLK
101: AISVCKSGSQ NSSCSAVPSN ESTDGACIRK DKDFLSRLVE TGATESSGCH LENHVHSSTT DVLQNILFSS NDSWHANEKL PLDHFTALPE DERIRELRST
201: ASEISLELTD AVRALGDLHL KHRQLTEKHH EERYLNARSK AEQKRLKEEL ASAAAELEES NHKLAVLKAQ GDTTHGTPIL FPTLGNKSFP QDNVRDKQKE
301: LQDLGASHKE FTGLISQRLA EIRRLHEERI EILNKLATFQ NILTDLKSIS SSKAFQVLKD QLQKSQAELD QCRTLLEKLQ VNKDKLIWQE REINVKVDLS
401: GIPHRVSLNC ESTLAVLDQN LRKVVDEKNM LALKLEESSR EPGRNQTISE FKALVSSLPE EMGAMQTELS KYKDDASELH SLRAEVRSIS DILARNEHAI
501: NESLCKSTRA GPEVRDLRSR VHELRQTNCE LKLFVEMYKR ESTDSRDVLE SKDREYCEWA RAHSLKSSLD DSRLEQRVKA AIEAEATSQQ RLANGEAQIA
601: ELRGKMESAR RDIGSLSELL KSKHEEGEAY LSEIESIGQA YEDIQTQNQQ LLQQIIERDD HNTKIFMEGV KVKQAQDTLH LELCNLNRNL RQAKGLMDLY
701: KDKISQLDDK LKVWSEQTAR LSEDGRRHSV SSGNAQRKLA DVLGEAQQLR QSMDQVQSNV GRSRLEVAGL LVELEKDRFS KRRTEDDLES LSRKASSLRA
801: KTEGSSVLEK VHQEVNEYRG ILKCGVCRDR QKEVVITKCY HLFCNDCIQK LLRNRQRRCP SCALSFGAND VKPIYI
101: AISVCKSGSQ NSSCSAVPSN ESTDGACIRK DKDFLSRLVE TGATESSGCH LENHVHSSTT DVLQNILFSS NDSWHANEKL PLDHFTALPE DERIRELRST
201: ASEISLELTD AVRALGDLHL KHRQLTEKHH EERYLNARSK AEQKRLKEEL ASAAAELEES NHKLAVLKAQ GDTTHGTPIL FPTLGNKSFP QDNVRDKQKE
301: LQDLGASHKE FTGLISQRLA EIRRLHEERI EILNKLATFQ NILTDLKSIS SSKAFQVLKD QLQKSQAELD QCRTLLEKLQ VNKDKLIWQE REINVKVDLS
401: GIPHRVSLNC ESTLAVLDQN LRKVVDEKNM LALKLEESSR EPGRNQTISE FKALVSSLPE EMGAMQTELS KYKDDASELH SLRAEVRSIS DILARNEHAI
501: NESLCKSTRA GPEVRDLRSR VHELRQTNCE LKLFVEMYKR ESTDSRDVLE SKDREYCEWA RAHSLKSSLD DSRLEQRVKA AIEAEATSQQ RLANGEAQIA
601: ELRGKMESAR RDIGSLSELL KSKHEEGEAY LSEIESIGQA YEDIQTQNQQ LLQQIIERDD HNTKIFMEGV KVKQAQDTLH LELCNLNRNL RQAKGLMDLY
701: KDKISQLDDK LKVWSEQTAR LSEDGRRHSV SSGNAQRKLA DVLGEAQQLR QSMDQVQSNV GRSRLEVAGL LVELEKDRFS KRRTEDDLES LSRKASSLRA
801: KTEGSSVLEK VHQEVNEYRG ILKCGVCRDR QKEVVITKCY HLFCNDCIQK LLRNRQRRCP SCALSFGAND VKPIYI
001: MASTGEPDRK RRHFSSISPS EAAAAVKKQP FFWPSSEDKL DTAVLQFQNL KLSQKLEAQQ VECSILEDKL SQIKEKQLPY NSSLKTVHKS WEKLTASVES
101: CSVRVSDSSS GAHRFVNKED GSSPAVKNDF INRLLETGAT ESSSSNICSN QMEENGVNTS SQMTQTLYNL VAATEDLRCL KDELYPTVLR TNLGKDLCGQ
201: LALSELESEI KSFRGDLDDV LVKFKSLSRE LQSHRDADAK VRVDLKRIRG ELEDEVVELQ QCNGDLSALR AERDATAGAF FPVLSLGNKL ATSDRERDKQ
301: RDLQDMETVL KELTVLASGR LQQLKNLHEE RTKMLGKMSN LQNKSKSVRC ISSSQACLSL KDQLEKSKEA VFQYMALLEK LQVEKDSIVW KEREINIKNE
401: LGDVSRKTSA VTDSRMASLD SEIQKQLDEK MRIKTRLGNI SRERGRKEIF ADMKALISSF PEEMSSMRSQ LNNYKETAGG IHSLRADVQS LSGVLCRKTK
501: EYEALQLRSA DYASQLGDLN ATVCDLKNSH EELKLFLDMY KRESTDARDI AEAKEQEYRA WAHVQSLKSS LDEQNLELRV KAANEAEAVS QQMLAAAEAE
601: IADLRQKMDD CKRDVAKHSD ILKSKHEEHG TYLSEIQTIG SAYEDIVPQN QQLLLQVTER DDYNIKLFLE GITSRQMQDT LLIDKYIMDK DIQQGSAYAS
701: FLSKKSSRIE DQLRFCTDQF QKLAEDKYQK SVSLENLQKK RADIGNGLEQ ARSRLEESHS KVEQSRLDYG ALELELEIER FNRRRIEEEM EIAKKKVSRL
801: RSLIEGSSAI QKLRQELSEF KEILKCKACN DRPKEVVITK CYHLFCNPCV QKLTGTRQKK CPTCSASFGP NDIKPIYI
101: CSVRVSDSSS GAHRFVNKED GSSPAVKNDF INRLLETGAT ESSSSNICSN QMEENGVNTS SQMTQTLYNL VAATEDLRCL KDELYPTVLR TNLGKDLCGQ
201: LALSELESEI KSFRGDLDDV LVKFKSLSRE LQSHRDADAK VRVDLKRIRG ELEDEVVELQ QCNGDLSALR AERDATAGAF FPVLSLGNKL ATSDRERDKQ
301: RDLQDMETVL KELTVLASGR LQQLKNLHEE RTKMLGKMSN LQNKSKSVRC ISSSQACLSL KDQLEKSKEA VFQYMALLEK LQVEKDSIVW KEREINIKNE
401: LGDVSRKTSA VTDSRMASLD SEIQKQLDEK MRIKTRLGNI SRERGRKEIF ADMKALISSF PEEMSSMRSQ LNNYKETAGG IHSLRADVQS LSGVLCRKTK
501: EYEALQLRSA DYASQLGDLN ATVCDLKNSH EELKLFLDMY KRESTDARDI AEAKEQEYRA WAHVQSLKSS LDEQNLELRV KAANEAEAVS QQMLAAAEAE
601: IADLRQKMDD CKRDVAKHSD ILKSKHEEHG TYLSEIQTIG SAYEDIVPQN QQLLLQVTER DDYNIKLFLE GITSRQMQDT LLIDKYIMDK DIQQGSAYAS
701: FLSKKSSRIE DQLRFCTDQF QKLAEDKYQK SVSLENLQKK RADIGNGLEQ ARSRLEESHS KVEQSRLDYG ALELELEIER FNRRRIEEEM EIAKKKVSRL
801: RSLIEGSSAI QKLRQELSEF KEILKCKACN DRPKEVVITK CYHLFCNPCV QKLTGTRQKK CPTCSASFGP NDIKPIYI
Arabidopsis Description
HUB1E3 ubiquitin-protein ligase BRE1-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXD6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.