Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040332.1-P | Field mustard | nucleus | 99.66 | 99.43 |
| CDY27400 | Canola | nucleus | 94.98 | 95.42 |
| AT2G44950.1 | Thale cress | nucleus | 86.89 | 86.79 |
| CDY18962 | Canola | nucleus | 86.2 | 86.6 |
| CDX74700 | Canola | nucleus | 86.77 | 86.38 |
| VIT_15s0021g02140.t01 | Wine grape | nucleus | 54.39 | 54.33 |
| Solyc11g013370.1.1 | Tomato | nucleus | 48.57 | 50.3 |
| GSMUA_Achr4P26970_001 | Banana | nucleus | 21.78 | 50.0 |
| KRH30315 | Soybean | nucleus | 49.26 | 49.15 |
| KRH75261 | Soybean | nucleus | 49.03 | 48.86 |
| GSMUA_Achr1P01610_001 | Banana | nucleus | 43.22 | 43.02 |
| HORVU0Hr1G018210.6 | Barley | nucleus | 41.05 | 41.24 |
| Os04t0550400-01 | Rice | nucleus | 41.51 | 41.18 |
| TraesCS3B01G401200.2 | Wheat | nucleus | 40.82 | 41.15 |
| TraesCS3D01G362300.2 | Wheat | nucleus | 40.82 | 41.15 |
| TraesCS6B01G274100.2 | Wheat | nucleus | 40.82 | 40.87 |
| TraesCS3A01G369300.2 | Wheat | nucleus | 40.36 | 40.69 |
| TraesCS6D01G233000.5 | Wheat | nucleus | 40.59 | 40.64 |
| TraesCS6A01G251200.2 | Wheat | nucleus | 40.48 | 40.53 |
| EER88892 | Sorghum | cytosol | 38.54 | 39.72 |
| Zm00001d014640_P035 | Maize | cytosol | 37.97 | 38.72 |
| GSMUA_Achr4P26960_001 | Banana | nucleus | 21.89 | 37.94 |
| Zm00001d036507_P003 | Maize | cytosol | 36.26 | 36.51 |
| CDY02453 | Canola | nucleus | 27.71 | 27.55 |
| CDY10575 | Canola | nucleus | 27.59 | 27.38 |
| CDY65754 | Canola | cytosol | 3.99 | 20.23 |
Protein Annotations
| MapMan:19.2.2.1.5.3.2 | Gene3D:3.30.40.10 | GO:A0A078HF79 | UniProt:A0A078HF79 | EnsemblPlants:CDY37020 | ProteinID:CDY37020 |
| ProteinID:CDY37020.1 | ncoils:Coil | InterPro:E3_ubiquit_lig_Bre1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010390 | GO:GO:0016043 |
| GO:GO:0016740 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00063223001 | InterPro:IPR001841 | InterPro:IPR013083 | PFAM:PF13920 |
| ScanProsite:PS00518 | PFscan:PS50089 | PANTHER:PTHR23163 | PANTHER:PTHR23163:SF3 | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI0004EDB63B | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | SEG:seg | : |
Description
BnaA04g25980DBnaA04g25980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HF79]
Coordinates
chrLK032390:-:33616..39380
Molecular Weight (calculated)
99614.4 Da
IEP (calculated)
7.234
GRAVY (calculated)
-0.614
Length
877 amino acids
Sequence
(BLAST)
(BLAST)
001: MASTGEADRK KRLFSSISTT ETAAVVKKQP FFWPSSEDKL DTAVLQFQNL KLSQKLEAQQ VECSILEDRL SKIKDKQLPF SSCLKTVHKS WEKLTAEVES
101: CSIRVSDSSS GAHGSVLYGS SPAVKDDFIN RLLETGATES SSSNTCSNQK EENRENTSSQ LTQTLCNLVA ATNDLRCLKD ELYPTALRTG LDKDLCGQQL
201: ALNELESEMK SFRVVLDDVL VKFKSLSREL QSHRDTDAKV RADLKRIRGE LENEVVELQQ CNGELSALRA ERDATAGAFF PVLSPGNKLA TRDKARDKQR
301: DLQDMESILK DLTVLASSRL QELKDLHEER TKILEKMSVL QNKSNSVTSI SSSKACLSLK DQLRKSKEAV FKYMALLEKL QVEKDSIFWR EREISIKNEL
401: VDVARRSSSV ADSRMASLDV EIQKQVDYKS RIKTRLENIS KERGRKEIFA DMKALVASFP GEMSSMRSQL ENYKETAGGI HSLRADVQSL SGVLCRKTKE
501: CEALQLRSAD YASQLHDLNA TVGDLKNSHE ELKLFLDMYK RESTDPRDIA EAKEQEYRAW ARVQSLKSSL DEQNLELRVK AANEAEAVSQ QMLAAAEAEI
601: ADLRQKIDDC KRDVVKHSDI LKSKHEEHGT YLSEMQAIGS AYEDIVPQNQ QLLLQVTERD DYNIKLFLEG ITSRQMQDAL LIDKYIMDKD IQQASASASF
701: LSKKSLRIED QMRFCTEQYQ RLAEDRYQKS STHEILQKKR ADVVNGLEQA RSKLEESHSK VEQSRVDYGA LELELEIERF NRRRIEEEVE TVKTKVSRLR
801: SLVEGSSAIQ KLRQELNEFK EILKCKACND RSKEVVITKC FHLFCNPCVL KITGTRQRKC PTCSASFGPN DIKPIYI
101: CSIRVSDSSS GAHGSVLYGS SPAVKDDFIN RLLETGATES SSSNTCSNQK EENRENTSSQ LTQTLCNLVA ATNDLRCLKD ELYPTALRTG LDKDLCGQQL
201: ALNELESEMK SFRVVLDDVL VKFKSLSREL QSHRDTDAKV RADLKRIRGE LENEVVELQQ CNGELSALRA ERDATAGAFF PVLSPGNKLA TRDKARDKQR
301: DLQDMESILK DLTVLASSRL QELKDLHEER TKILEKMSVL QNKSNSVTSI SSSKACLSLK DQLRKSKEAV FKYMALLEKL QVEKDSIFWR EREISIKNEL
401: VDVARRSSSV ADSRMASLDV EIQKQVDYKS RIKTRLENIS KERGRKEIFA DMKALVASFP GEMSSMRSQL ENYKETAGGI HSLRADVQSL SGVLCRKTKE
501: CEALQLRSAD YASQLHDLNA TVGDLKNSHE ELKLFLDMYK RESTDPRDIA EAKEQEYRAW ARVQSLKSSL DEQNLELRVK AANEAEAVSQ QMLAAAEAEI
601: ADLRQKIDDC KRDVVKHSDI LKSKHEEHGT YLSEMQAIGS AYEDIVPQNQ QLLLQVTERD DYNIKLFLEG ITSRQMQDAL LIDKYIMDKD IQQASASASF
701: LSKKSLRIED QMRFCTEQYQ RLAEDRYQKS STHEILQKKR ADVVNGLEQA RSKLEESHSK VEQSRVDYGA LELELEIERF NRRRIEEEVE TVKTKVSRLR
801: SLVEGSSAIQ KLRQELNEFK EILKCKACND RSKEVVITKC FHLFCNPCVL KITGTRQRKC PTCSASFGPN DIKPIYI
001: MASTGEPDRK RRHFSSISPS EAAAAVKKQP FFWPSSEDKL DTAVLQFQNL KLSQKLEAQQ VECSILEDKL SQIKEKQLPY NSSLKTVHKS WEKLTASVES
101: CSVRVSDSSS GAHRFVNKED GSSPAVKNDF INRLLETGAT ESSSSNICSN QMEENGVNTS SQMTQTLYNL VAATEDLRCL KDELYPTVLR TNLGKDLCGQ
201: LALSELESEI KSFRGDLDDV LVKFKSLSRE LQSHRDADAK VRVDLKRIRG ELEDEVVELQ QCNGDLSALR AERDATAGAF FPVLSLGNKL ATSDRERDKQ
301: RDLQDMETVL KELTVLASGR LQQLKNLHEE RTKMLGKMSN LQNKSKSVRC ISSSQACLSL KDQLEKSKEA VFQYMALLEK LQVEKDSIVW KEREINIKNE
401: LGDVSRKTSA VTDSRMASLD SEIQKQLDEK MRIKTRLGNI SRERGRKEIF ADMKALISSF PEEMSSMRSQ LNNYKETAGG IHSLRADVQS LSGVLCRKTK
501: EYEALQLRSA DYASQLGDLN ATVCDLKNSH EELKLFLDMY KRESTDARDI AEAKEQEYRA WAHVQSLKSS LDEQNLELRV KAANEAEAVS QQMLAAAEAE
601: IADLRQKMDD CKRDVAKHSD ILKSKHEEHG TYLSEIQTIG SAYEDIVPQN QQLLLQVTER DDYNIKLFLE GITSRQMQDT LLIDKYIMDK DIQQGSAYAS
701: FLSKKSSRIE DQLRFCTDQF QKLAEDKYQK SVSLENLQKK RADIGNGLEQ ARSRLEESHS KVEQSRLDYG ALELELEIER FNRRRIEEEM EIAKKKVSRL
801: RSLIEGSSAI QKLRQELSEF KEILKCKACN DRPKEVVITK CYHLFCNPCV QKLTGTRQKK CPTCSASFGP NDIKPIYI
101: CSVRVSDSSS GAHRFVNKED GSSPAVKNDF INRLLETGAT ESSSSNICSN QMEENGVNTS SQMTQTLYNL VAATEDLRCL KDELYPTVLR TNLGKDLCGQ
201: LALSELESEI KSFRGDLDDV LVKFKSLSRE LQSHRDADAK VRVDLKRIRG ELEDEVVELQ QCNGDLSALR AERDATAGAF FPVLSLGNKL ATSDRERDKQ
301: RDLQDMETVL KELTVLASGR LQQLKNLHEE RTKMLGKMSN LQNKSKSVRC ISSSQACLSL KDQLEKSKEA VFQYMALLEK LQVEKDSIVW KEREINIKNE
401: LGDVSRKTSA VTDSRMASLD SEIQKQLDEK MRIKTRLGNI SRERGRKEIF ADMKALISSF PEEMSSMRSQ LNNYKETAGG IHSLRADVQS LSGVLCRKTK
501: EYEALQLRSA DYASQLGDLN ATVCDLKNSH EELKLFLDMY KRESTDARDI AEAKEQEYRA WAHVQSLKSS LDEQNLELRV KAANEAEAVS QQMLAAAEAE
601: IADLRQKMDD CKRDVAKHSD ILKSKHEEHG TYLSEIQTIG SAYEDIVPQN QQLLLQVTER DDYNIKLFLE GITSRQMQDT LLIDKYIMDK DIQQGSAYAS
701: FLSKKSSRIE DQLRFCTDQF QKLAEDKYQK SVSLENLQKK RADIGNGLEQ ARSRLEESHS KVEQSRLDYG ALELELEIER FNRRRIEEEM EIAKKKVSRL
801: RSLIEGSSAI QKLRQELSEF KEILKCKACN DRPKEVVITK CYHLFCNPCV QKLTGTRQKK CPTCSASFGP NDIKPIYI
Arabidopsis Description
HUB1E3 ubiquitin-protein ligase BRE1-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXD6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.