Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012201.1-P | Field mustard | nucleus | 97.72 | 64.26 |
| CDY43422 | Canola | nucleus | 88.13 | 59.38 |
| CDY62942 | Canola | nucleus | 67.58 | 44.85 |
| AT1G19980.1 | Thale cress | nucleus | 69.86 | 44.74 |
| CDX83731 | Canola | nucleus | 57.08 | 35.71 |
| VIT_18s0001g14300.t01 | Wine grape | nucleus | 42.47 | 24.54 |
| PGSC0003DMT400025536 | Potato | nucleus | 34.7 | 21.17 |
| Solyc04g081450.2.1 | Tomato | nucleus | 34.25 | 20.89 |
| KRH36857 | Soybean | nucleus | 34.25 | 19.58 |
| KRH11849 | Soybean | nucleus | 33.33 | 19.06 |
| GSMUA_Achr8P19330_001 | Banana | nucleus | 31.51 | 16.63 |
| TraesCS2B01G013500.2 | Wheat | nucleus | 25.57 | 14.58 |
| TraesCS2A01G007200.1 | Wheat | nucleus | 25.11 | 14.44 |
| TraesCS2D01G008300.2 | Wheat | nucleus | 24.66 | 14.1 |
| TraesCS1A01G373900.2 | Wheat | nucleus | 11.42 | 13.09 |
| Os04t0117200-01 | Rice | cytosol | 24.66 | 13.04 |
| Zm00001d039489_P002 | Maize | nucleus | 21.0 | 12.37 |
| EES02317 | Sorghum | cytosol | 20.55 | 11.22 |
| HORVU2Hr1G001310.16 | Barley | cytosol | 21.92 | 11.06 |
| TraesCS1B01G394200.1 | Wheat | cytosol, mitochondrion, nucleus | 8.68 | 10.22 |
| TraesCS6A01G051100.1 | Wheat | nucleus | 13.7 | 8.02 |
| OQU86794 | Sorghum | endoplasmic reticulum, nucleus, peroxisome, plastid | 16.44 | 6.7 |
| TraesCS1B01G393900.3 | Wheat | cytosol | 15.07 | 5.71 |
| TraesCS1D01G380600.1 | Wheat | nucleus | 10.96 | 5.39 |
| TraesCS6B01G067600.1 | Wheat | nucleus | 13.24 | 5.07 |
| TraesCS1D01G380700.1 | Wheat | cytosol | 15.07 | 4.74 |
| TraesCS1A01G374100.1 | Wheat | cytosol | 12.33 | 4.56 |
Protein Annotations
| EnsemblPlants:CDY57605 | EnsemblPlantsGene:GSBRNA2T00022406001 | ncoils:Coil | PANTHER:PTHR35992 | ProteinID:CDY57605 | ProteinID:CDY57605.1 |
| UniParc:UPI0004EDBD34 | UniProt:A0A078J2G7 | MapMan:35.2 | : | : | : |
Description
BnaAnng14780DBnaAnng14780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J2G7]
Coordinates
chrLK033587:-:52896..53851
Molecular Weight (calculated)
25557.5 Da
IEP (calculated)
6.556
GRAVY (calculated)
-0.783
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVKSVSRES SDRKNWDKIF KNLVKWLQMK QDQIESLLKD RKSIEDKLKT KHQNWISDVR NYEEQLSLMK REIETMEMMQ FFETSKSNLL SVLKEKNHSL
101: CNLKLDEAVD ELKDFKALFD FLTLNTSKDN GDTEAAESLE VKIRKLKLEY EKLASEKKCE VSDLRRENGF ALSQFKCIQT GFTDKLKRKD EEIAQANAKV
201: STLLSCQEQL QSSNLELEG
101: CNLKLDEAVD ELKDFKALFD FLTLNTSKDN GDTEAAESLE VKIRKLKLEY EKLASEKKCE VSDLRRENGF ALSQFKCIQT GFTDKLKRKD EEIAQANAKV
201: STLLSCQEQL QSSNLELEG
001: MVVKSVSGDS SERENWETIF KSLVKILQTK QDQLESLLKD KKILESEIKT NNENWLSDVR NYEDQLSLMM KEIETTKMFQ LLETYKSNLL CGLKEKDRSL
101: CNLKLEHSLD ELKDFKAWFD FLTLNTNVES VSGNSEGTAI KSLEAKIRKL KLEYEKLASE KKCEVSDLLR ENGFAWNQFK CIESEFTDKL KRKDDEIVQA
201: NTKISSLISY QEQLQSSNQE KDETISRLKA KMAEMETNST KKDEEISKLT RDLESAKKSR GFTPVLTRCT KLEKRSNGNT VGSHISTKKD KSAASTTNEK
301: VSKSSKRKRA KNMTPVSVSE VPKLFTSTFR LPKLKSPSNG AI
101: CNLKLEHSLD ELKDFKAWFD FLTLNTNVES VSGNSEGTAI KSLEAKIRKL KLEYEKLASE KKCEVSDLLR ENGFAWNQFK CIESEFTDKL KRKDDEIVQA
201: NTKISSLISY QEQLQSSNQE KDETISRLKA KMAEMETNST KKDEEISKLT RDLESAKKSR GFTPVLTRCT KLEKRSNGNT VGSHISTKKD KSAASTTNEK
301: VSKSSKRKRA KNMTPVSVSE VPKLFTSTFR LPKLKSPSNG AI
Arabidopsis Description
Cytomatrix protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q84JE5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.