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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • plastid 2
  • cytosol 1
PPI

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G30860.1 CDX90047 AT1G01630.1 21798944
AT1G30860.1 CDY15164 AT1G01630.1 21798944
AT1G30860.1 CDY38020 AT1G01630.1 21798944
AT1G30860.1 CDX93482 AT1G09770.1 21798944
AT1G30860.1 CDX94951 AT1G09770.1 21798944
AT1G30860.1 CDY20673 AT1G09770.1 21798944
AT1G30860.1 CDY31065 AT1G09770.1 21798944
AT1G30860.1 CDY47227 AT1G09770.1 21798944
AT1G30860.1 CDY53058 AT1G09770.1 21798944
AT1G30860.1 CDY03843 AT1G61590.1 21798944
AT1G30860.1 CDY26353 AT1G61590.1 21798944
AT1G30860.1 CDY47586 AT1G61590.1 21798944
AT1G30860.1 CDY52676 AT1G61590.1 21798944
AT1G30860.1 CDY52677 AT1G61590.1 21798944
AT1G30860.1 CDY65103 AT1G61590.1 21798944
AT1G30860.1 CDY65104 AT1G61590.1 21798944
AT1G30860.1 CDY65105 AT1G61590.1 21798944
AT1G30860.1 CDX77810 AT2G01250.1 21798944
AT1G30860.1 CDY17686 AT2G01250.1 21798944
AT1G30860.1 CDY25941 AT2G01250.1 21798944
AT1G30860.1 CDY37358 AT2G01250.1 21798944
AT1G30860.1 CDY40393 AT2G01250.1 21798944
AT1G30860.1 CDY41074 AT2G01250.1 21798944
AT1G30860.1 CDX91471 AT2G38490.1 21798944
AT1G30860.1 CDY07727 AT2G38490.1 21798944
AT1G30860.1 CDY14457 AT2G38490.1 21798944
AT1G30860.1 CDY65565 AT2G38490.1 21798944
AT1G30860.1 CDX93236 AT2G39760.1 21798944
AT1G30860.1 CDX93238 AT2G39760.1 21798944
AT1G30860.1 CDY07031 AT2G39760.1 21798944
AT1G30860.1 CDY07638 AT2G39760.1 21798944
AT1G30860.1 CDY61778 AT2G39760.1 21798944
AT1G30860.1 CDX83484 AT2G43370.1 21798944
AT1G30860.1 CDY14697 AT2G43370.1 21798944
AT1G30860.1 CDY22251 AT2G43370.1 21798944
AT1G30860.1 CDY23361 AT2G43370.1 21798944
AT1G30860.1 CDY44222 AT2G43370.1 21798944
AT1G30860.1 CDX77081 AT3G01690.1 21798944
AT1G30860.1 CDY28668 AT3G01690.1 21798944
AT1G30860.1 CDY28862 AT3G01690.1 21798944
AT1G30860.1 CDY32850 AT3G01690.1 21798944
AT1G30860.1 CDY37505 AT3G01690.1 21798944
AT1G30860.1 CDX73866 AT3G11590.1 21798944
AT1G30860.1 CDY01038 AT3G11590.1 21798944
AT1G30860.1 CDY08511 AT3G11590.1 21798944
AT1G30860.1 CDY56601 AT3G11590.1 21798944
AT1G30860.1 CDX71815 AT3G60360.1 21798944
AT1G30860.1 CDY41170 AT3G60360.1 21798944
AT1G30860.1 CDY56997 AT3G60360.1 21798944
AT1G30860.1 CDY58906 AT3G60360.1 21798944
AT1G30860.1 CDX89193 AT4G28230.1 21798944
AT1G30860.1 CDY18994 AT4G28230.1 21798944
AT1G30860.1 CDX69885 AT5G09810.1 21798944
AT1G30860.1 CDX81140 AT5G09810.1 21798944
AT1G30860.1 CDX85794 AT5G09810.1 21798944
AT1G30860.1 CDY21607 AT5G09810.1 21798944
AT1G30860.1 CDY30296 AT5G09810.1 21798944
AT1G30860.1 CDY31972 AT5G09810.1 21798944
AT1G30860.1 CDY40061 AT5G09810.1 21798944
AT1G30860.1 CDY56544 AT5G09810.1 21798944
AT1G30860.1 CDX70996 AT5G22310.1 21798944
AT1G30860.1 CDX88802 AT5G22310.1 21798944
AT1G30860.1 CDX92367 AT5G22310.1 21798944
AT1G30860.1 CDY67997 AT5G22310.1 21798944
AT1G30860.1 CDX74505 AT5G22890.1 21798944
AT1G30860.1 CDX98183 AT5G22890.1 21798944
AT1G30860.1 CDY09178 AT5G22890.1 21798944
AT1G30860.1 CDY09179 AT5G22890.1 21798944
AT1G30860.1 CDY26965 AT5G22890.1 21798944
AT1G30860.1 CDY26966 AT5G22890.1 21798944
AT1G30860.1 CDY31715 AT5G22890.1 21798944
AT1G30860.1 CDY69109 AT5G22890.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra039871.1-P Field mustard nucleus 87.59 85.47
CDY12454 Canola nucleus 76.64 81.4
CDY02344 Canola cytosol 48.61 48.4
AT1G30860.1 Thale cress cytosol 48.61 45.62
CDY09519 Canola nucleus 46.28 44.21
CDY31650 Canola nucleus, plastid 35.47 37.73
CDX84276 Canola endoplasmic reticulum, extracellular 32.7 33.09
VIT_01s0010g00340.t01 Wine grape nucleus 24.67 23.18
CDX96975 Canola cytosol 22.19 22.13
KRH37161 Soybean nucleus 29.64 22.02
GSMUA_Achr4P33210_001 Banana nucleus 17.37 21.92
KRH12155 Soybean nucleus 27.88 20.83
GSMUA_Achr7P00390_001 Banana nucleus 19.71 18.57
CDY50063 Canola cytosol 28.03 17.47
Solyc10g005220.2.1 Tomato nucleus, plastid 23.8 17.3
PGSC0003DMT400029374 Potato nucleus, plastid 24.67 17.14
TraesCS2A01G229600.2 Wheat nucleus, plastid 18.1 16.78
PGSC0003DMT400035458 Potato nucleus 25.26 16.71
CDX78978 Canola cytosol 27.3 16.52
TraesCS2B01G251300.1 Wheat nucleus, plastid 17.52 16.35
Solyc02g082100.2.1 Tomato vacuole 25.26 16.05
TraesCS2D01G233500.1 Wheat cytosol, plastid 17.52 15.85
Zm00001d021532_P001 Maize cytosol, plastid 17.66 15.65
CDY14941 Canola nucleus 14.16 15.62
EER99396 Sorghum plastid 17.52 15.54
HORVU2Hr1G048520.1 Barley plastid 14.31 15.24
Zm00001d006417_P002 Maize plastid 12.85 14.99
Os07t0499800-01 Rice nucleus 16.06 14.63
CDY08599 Canola nucleus 10.66 10.1
CDY41355 Canola nucleus 10.37 9.43
CDX70223 Canola cytosol 10.07 8.9
CDY04520 Canola cytosol, plastid 8.47 8.55
CDY44857 Canola nucleus 9.64 8.49
CDY00948 Canola cytosol 8.91 8.46
CDX71406 Canola cytosol 4.09 5.01
Os03t0107500-00 Rice plasma membrane 2.04 3.84
Protein Annotations
EnsemblPlants:CDY52188EnsemblPlantsGene:GSBRNA2T00005044001Gene3D:3.30.40.10GO:A0A078IT13InterPro:IPR001841InterPro:IPR013083
InterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHDncoils:CoilPANTHER:PTHR10044PANTHER:PTHR10044:SF103PFAM:PF13920
PFscan:PS50089ProteinID:CDY52188ProteinID:CDY52188.1SEG:segSUPFAM:SSF57850UniParc:UPI0004EE6066
UniProt:A0A078IT13MapMan:35.2::::
Description
BnaAnng11290DBnaAnng11290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IT13]
Coordinates
chrLK033063:+:55357..57986
Molecular Weight (calculated)
78108.5 Da
IEP (calculated)
4.961
GRAVY (calculated)
-0.943
Length
685 amino acids
Sequence
(BLAST)
001: MASSQVEIPS PSQRFGFILR DRNQTPIVYK KAPNHQQPVS DENSQNLVDS WIQTLNKKKD NNNARSTEKP IALEKSDESN RNGASSLVQI WEARLLNRST
101: SPSHNQSPVN SSRSDSGVSV QDSRSSESPS IESEAEISDV EIESRSHGGS VSDSCRVADL IRRLSNEAKV ISGGGLSTIR TPRPCVSSWS SSEKSSFPMV
201: TPRIRGRQAF TDLLMHMERD RHRELDSLLE RNAVSRFTQR GRLQSMLRLR NLKRCQAVQE QNRSNSKSTG LNRIGSGGSS VLHLRERFRA DVDKRKDNHF
301: MNKKTVEETE VTSDNKTMKN GGLTLEAFFK ERLSLPNPNL EKATLRKGEE TVNGTVGLKN NCLQLQETIE VEEACCNDDD SDKKEEEKTS PSACVDQETQ
401: PQSVVPESIE VDQCLEQQET SYLNGWEDEE EYEEDEQSYY YGETNNDWLH EISRPRSYWE ELRKTRYLEV MNTRSEKEDI RRLLERGPVT DFLQSGLRDQ
501: IDRLMMSRVQ THSNKHSEKW ELQEEEEEEH RNENPFTEEG EEQDDGDDSS SSPIFASSPA GSWSCQDTEV TSTPVLSVHN PPSPEMELIS EMRTQIQQLQ
601: QEMSLLRDSV KTCLDTNASL VHRENPMKRK CCVCDETQVE AVLYRCGHMC TCLKCANELH WSGGKCPICR AQIMDVVRVF FDTRN
Best Arabidopsis Sequence Match ( AT1G30860.1 )
(BLAST)
001: MVSSPQRFGL ILRDRNQNAG VFQKNLKSPV KEVLKSHVSD ENLVDSWIET HNNKNNRVLE SPLESKRNDN LVASSLVQIW EARLNRSNGG NSPSSSQSTA
101: SSSSRSDSGV SVQDSGLSES SSIDGDSEIA DRTVEIESRS HGLVSDSGES KWGRVADLIR RLSNEDKKRT AGDNGSGGGG GLEIIRTPRP YCTSSSSEKS
201: NFPVVSFSPK IRGRQAFTDF LMQMERDRHR ELDSLFERNA VSRFTQRGRL QSMLRLRNLN RCLVIQDRNR SNAKTTGLNR IESGSAVLHL REKFHANVVN
301: SAAATDKRKN HQRSTEMNNK SVEETEGTTT TSTRLKDGGV TLEAFFAERL RPRNRKIEEA TLCKEEESVS GTVDSQKNCL QLQETREVEE TCNDGKSEKK
401: EEENTSPSEY LSRESRLRQN QDENNVGKYM QETRETEGLV HESNEMDQCL DQQETSYLNR WGEQEEYADE QSYYGEYNDD WLSEIARPRS YWEELRKSRY
501: LEVMNTRSEK DDICRLLERR TVTDFLDSGL REKIDNLMMS RVQTHSDKHS KKWELQQEEE EEVNFEIDEE IKEEPLRGGE EQDDRDDLSQ SSSSHISASS
601: PAGSWSSQDT DVTSTPALVV QNPQSPEMEL ISGMRSQIQQ LQQEMSVLRD SVKTCLDANA SLQHKAHQEN PMKRKCCVCD ETQVEAVLYR CGHMCMCLKC
701: ANELHWSGGK CPICRAQIVD VVRVIYDTRN
Arabidopsis Description
At1g30860 [Source:UniProtKB/TrEMBL;Acc:Q6NQ80]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.