CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72718
CDX90305
CDY00020
CDY12116
CDY22394
CDY57012

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01690.1	CDX72718	AT4G39050.1	21798944
AT3G01690.1	CDX90305	AT4G39050.1	21798944
AT3G01690.1	CDY12116	AT4G39050.1	21798944
AT3G01690.1	CDY22394	AT4G39050.1	21798944
AT3G01690.1	CDY00020	AT5G28900.1	21798944
AT3G01690.1	CDY57012	AT5G28900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31930	Canola	cytosol	17.54	57.81
CDY37505	Canola	cytosol, extracellular	17.06	53.73
CDY32850	Canola	cytosol	72.99	44.77
CDY28668	Canola	cytosol, endoplasmic reticulum, nucleus, plastid	72.99	42.66
CDY28862	Canola	cytosol, endoplasmic reticulum, nucleus, plastid	72.99	42.66
CDX91066	Canola	plastid	64.45	41.46
AT3G01690.1	Thale cress	cytosol, plastid	70.14	41.0
CDY20302	Canola	cytosol	48.82	39.02
CDY09851	Canola	plastid	67.3	38.38
CDX69584	Canola	endoplasmic reticulum	67.3	38.38
KRH07089	Soybean	cytosol	66.35	38.04
KRH58237	Soybean	cytosol	65.88	37.87
KRG93968	Soybean	cytosol	65.88	37.87
VIT_14s0219g00290.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	65.88	37.77
CDY23273	Canola	cytosol	51.66	37.07
Solyc02g067920.2.1	Tomato	cytosol	64.93	37.03
CDY51485	Canola	cytosol	51.18	36.73
PGSC0003DMT400017818	Potato	cytosol	64.45	36.66
GSMUA_Achr9P02010_001	Banana	plastid	63.51	36.51
CDY28238	Canola	cytosol	50.71	36.39
GSMUA_Achr3P17130_001	Banana	plastid	63.03	36.24
CDX72285	Canola	cytosol	50.24	36.05
CDY03421	Canola	cytosol	61.14	35.93
CDY13406	Canola	cytosol	49.76	35.71
CDX68717	Canola	cytosol	49.76	35.71
CDY34308	Canola	cytosol	61.14	35.25
GSMUA_Achr8P28640_001	Banana	plastid	61.14	35.15
CDY53272	Canola	plastid	26.07	35.03
CDY20301	Canola	cytosol	48.82	34.92
GSMUA_Achr9P07620_001	Banana	plastid	60.19	34.51
CDY55247	Canola	cytosol	47.87	34.35
CDY34778	Canola	cytosol	47.39	34.01
CDY27016	Canola	plastid	54.5	33.63
OQU79022	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	58.29	33.52
CDY51065	Canola	plastid	54.5	33.43
Zm00001d030601_P001	Maize	plastid	57.35	32.97
Os12t0286600-01	Rice	cytosol, plastid	56.87	31.83
CDY46139	Canola	cytosol	37.91	31.75
CDY35777	Canola	cytosol	55.45	31.03
CDX86348	Canola	cytosol, nucleus, plastid	55.92	30.89
CDX85290	Canola	cytosol, nucleus, plastid	55.45	30.63
CDX98113	Canola	plastid	51.66	29.95
CDY56180	Canola	plastid	51.18	29.75
CDX92650	Canola	cytosol	60.66	29.49
CDY35552	Canola	plastid	46.92	28.37
CDX85599	Canola	cytosol	34.12	27.59
CDY22593	Canola	plastid	46.45	23.84
CDY12257	Canola	plastid	46.45	23.84
CDY43012	Canola	plastid	47.39	23.2
GSMUA_Achr9P22710_001	Banana	endoplasmic reticulum, golgi	35.55	22.94
CDY37504	Canola	cytosol	6.64	18.42
CDY11031	Canola	cytosol, plastid	18.01	15.9
CDY45906	Canola	cytosol	6.64	6.28

Protein Annotations

EnsemblPlants:CDX77081	EnsemblPlantsGene:GSBRNA2T00127663001	Gene3D:3.40.50.1820	InterPro:AB_hydrolase	InterPro:IPR029058	PANTHER:PTHR12277
PANTHER:PTHR12277:SF118	ProteinID:CDX77081	ProteinID:CDX77081.1	SUPFAM:SSF53474	UniParc:UPI0004EE0C24	MapMan:35.2

Description

BnaC04g38760D

Coordinates

chrLK031809:+:1012167..1019586

Molecular Weight (calculated)

23837.9 Da

IEP (calculated)

8.662

GRAVY (calculated)

-0.179

Length

211 amino acids

Sequence
(BLAST)

001: MGGMTSSVAA KLVFFPPSPP SYKVVTDKVT GLLLLASLPH RENVEIHKLQ TRRGTEIMAM YVRHPMANST IIYSHGNAAD LGQMYELLTK YPPRWMYTLY
101: PIRALHCQCL FDRPVENNTY ADIEAVYKCL EETYGSKQDD VILYGQSVGS GPTLDLASRL PLLRAGVLHS PILSGLRVMY AVKKTYWFDI YKNRQNHICG
201: LPNSHHSWDC G

Best Arabidopsis Sequence Match ( AT3G01690.1 )
(BLAST)

001: MGGVTSSVAA KFAFFPPSPP SYKVVTDELT GLLLLSPFPH RENVEIVKLR TRRGTEIVGM YVRHPMATST LLYSHGNAAD LGQMYELFIE LSIHLKVNLM
101: GYDYSGYGQS TGKPSEHNTY ADIEAVYKCL EETFGSKQEG VILYGQSVGS GPTLDLASRL PQLRAVVLHS PILSGLRVMY SVKKTYWFDI YKNIDKIPYV
201: DCPVLIIHGT SDEVVDCSHG KQLWELCKDK YEPLWVKGGN HCDLEHYPEY IRHLKKFIAT VERLPCPRMS SDQSERVRDA PPRRSMDRRV KPRQSTERRE
301: KEKPPKSQSK MSSSSSKLKI SFDQLDRSRR SVDCHEKTRK SVDQIERGRK SVDRLDRVRS E

Arabidopsis Description

Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9S7U7]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.