Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 2
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400008772 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G01690.1 | PGSC0003DMT400008772 | AT4G39050.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g067920.2.1 | Tomato | cytosol | 98.38 | 98.65 |
| VIT_14s0219g00290.t01 | Wine grape | cytosol, endoplasmic reticulum, nucleus | 88.41 | 89.13 |
| KRH07089 | Soybean | cytosol | 84.37 | 85.05 |
| KRH58237 | Soybean | cytosol | 82.75 | 83.65 |
| KRG93968 | Soybean | cytosol | 82.21 | 83.11 |
| PGSC0003DMT400039199 | Potato | cytosol | 80.05 | 80.05 |
| CDX91066 | Canola | plastid | 68.19 | 77.13 |
| AT3G01690.1 | Thale cress | cytosol, plastid | 74.66 | 76.73 |
| CDY09851 | Canola | plastid | 76.01 | 76.22 |
| Bra008761.1-P | Field mustard | endoplasmic reticulum | 75.47 | 75.68 |
| GSMUA_Achr9P02010_001 | Banana | plastid | 74.66 | 75.48 |
| CDX69584 | Canola | endoplasmic reticulum | 75.2 | 75.41 |
| AT5G14390.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 74.66 | 75.07 |
| GSMUA_Achr3P17130_001 | Banana | plastid | 73.58 | 74.39 |
| CDY32850 | Canola | cytosol | 68.73 | 74.13 |
| GSMUA_Achr8P28640_001 | Banana | plastid | 73.32 | 74.11 |
| CDY28862 | Canola | cytosol, endoplasmic reticulum, nucleus, plastid | 70.62 | 72.58 |
| CDY28668 | Canola | cytosol, endoplasmic reticulum, nucleus, plastid | 70.62 | 72.58 |
| PGSC0003DMT400068320 | Potato | cytosol | 53.91 | 71.17 |
| OQU79022 | Sorghum | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 69.81 | 70.57 |
| CDY37505 | Canola | cytosol, extracellular | 12.67 | 70.15 |
| GSMUA_Achr9P07620_001 | Banana | plastid | 68.73 | 69.29 |
| CDX85599 | Canola | cytosol | 48.52 | 68.97 |
| Zm00001d030601_P001 | Maize | plastid | 68.19 | 68.94 |
| Os12t0286600-01 | Rice | cytosol, plastid | 69.0 | 67.9 |
| PGSC0003DMT400003495 | Potato | plastid | 66.85 | 65.78 |
| Bra023463.1-P | Field mustard | cytosol | 48.52 | 65.45 |
| CDX77081 | Canola | plastid | 36.66 | 64.45 |
| PGSC0003DMT400067845 | Potato | cytosol, plastid | 57.68 | 63.13 |
| PGSC0003DMT400006272 | Potato | plastid | 56.87 | 61.88 |
| PGSC0003DMT400068318 | Potato | plastid | 18.6 | 61.06 |
| PGSC0003DMT400008297 | Potato | cytosol | 48.25 | 60.68 |
| GSMUA_Achr9P22710_001 | Banana | endoplasmic reticulum, golgi | 50.13 | 56.88 |
| PGSC0003DMT400050553 | Potato | cytosol | 53.91 | 53.91 |
| PGSC0003DMT400062645 | Potato | mitochondrion | 56.87 | 53.28 |
| PGSC0003DMT400006166 | Potato | plasma membrane, plastid | 43.4 | 41.28 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400017818 | EnsemblPlantsGene:PGSC0003DMG400006920 | EntrezGene:102595140 | Gene3D:3.40.50.1820 | InterPro:AB_hydrolase | InterPro:Hydrolase_4 |
| InterPro:IPR029058 | MEROPS:S09.A32 | PANTHER:PTHR12277 | PANTHER:PTHR12277:SF118 | PFAM:PF12146 | PGSC:PGSC0003DMG400006920 |
| RefSeq:XP_006357168.1 | RefSeq:XP_015168782.1 | SEG:seg | SUPFAM:SSF53474 | UniParc:UPI000295247D | UniProt:M1A9I4 |
| MapMan:35.2 | : | : | : | : | : |
Description
Protein bem46 [Source:PGSC_GENE;Acc:PGSC0003DMG400006920]
Coordinates
chr2:+:26604803..26612932
Molecular Weight (calculated)
42615.0 Da
IEP (calculated)
9.485
GRAVY (calculated)
-0.624
Length
371 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGVTSSMAA KFAFFPPNPP SYKLIKDDLT GLLLLSPFPH RENVEVLKLP TRKGTEIVAM YIRHPMATST LLYSHGNAAD LGQMYELFIE LSIHLRVNLL
101: GYDYSGYGQS TGKPSEQNTY ADIEAAYKCL EENYGTKQED VILYGQSVGS GPTLDLAARL PRLRSVILHS PLLSGLRVMY PVKRTYWFDI YKNIDKIPSV
201: NCPVLIIHGT ADEVVDFSHG KQLWELCKEK YEPLWIKGGN HCDLELYPEY IRHLKKFVAT IERSQSQRIS SRKSTDQQFE PPRKSTDVFE ASRKSSDRRE
301: KPRHSTDRPE KLKNHSSNAI TDKLEKLRIS FEQMERSRRS VDCTEKSRRS IDHQLERARK SVDRMERIRT G
101: GYDYSGYGQS TGKPSEQNTY ADIEAAYKCL EENYGTKQED VILYGQSVGS GPTLDLAARL PRLRSVILHS PLLSGLRVMY PVKRTYWFDI YKNIDKIPSV
201: NCPVLIIHGT ADEVVDFSHG KQLWELCKEK YEPLWIKGGN HCDLELYPEY IRHLKKFVAT IERSQSQRIS SRKSTDQQFE PPRKSTDVFE ASRKSSDRRE
301: KPRHSTDRPE KLKNHSSNAI TDKLEKLRIS FEQMERSRRS VDCTEKSRRS IDHQLERARK SVDRMERIRT G
001: MGGVTSSVAA KFAFFPPSPP SYKVVTDELT GLLLLSPFPH RENVEIVKLR TRRGTEIVGM YVRHPMATST LLYSHGNAAD LGQMYELFIE LSIHLKVNLM
101: GYDYSGYGQS TGKPSEHNTY ADIEAVYKCL EETFGSKQEG VILYGQSVGS GPTLDLASRL PQLRAVVLHS PILSGLRVMY SVKKTYWFDI YKNIDKIPYV
201: DCPVLIIHGT SDEVVDCSHG KQLWELCKDK YEPLWVKGGN HCDLEHYPEY IRHLKKFIAT VERLPCPRMS SDQSERVRDA PPRRSMDRRV KPRQSTERRE
301: KEKPPKSQSK MSSSSSKLKI SFDQLDRSRR SVDCHEKTRK SVDQIERGRK SVDRLDRVRS E
101: GYDYSGYGQS TGKPSEHNTY ADIEAVYKCL EETFGSKQEG VILYGQSVGS GPTLDLASRL PQLRAVVLHS PILSGLRVMY SVKKTYWFDI YKNIDKIPYV
201: DCPVLIIHGT SDEVVDCSHG KQLWELCKDK YEPLWVKGGN HCDLEHYPEY IRHLKKFIAT VERLPCPRMS SDQSERVRDA PPRRSMDRRV KPRQSTERRE
301: KEKPPKSQSK MSSSSSKLKI SFDQLDRSRR SVDCHEKTRK SVDQIERGRK SVDRLDRVRS E
Arabidopsis Description
Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9S7U7]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.