Factsheet for PGSC0003DMT400006272

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400004642
PGSC0003DMT400029374
PGSC0003DMT400035458
PGSC0003DMT400052841
PGSC0003DMT400068387

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38220.1	PGSC0003DMT400029374	AT1G30860.1	21798944
AT5G38220.1	PGSC0003DMT400035458	AT1G30860.1	21798944
AT5G38220.1	PGSC0003DMT400004642	AT4G17680.1	21798944
AT5G38220.1	PGSC0003DMT400052841	AT4G17680.1	21798944
AT5G38220.1	PGSC0003DMT400068387	AT4G17680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g034270.2.1	Tomato	plastid	95.31	95.59
PGSC0003DMT400062645	Potato	mitochondrion	99.71	85.86
PGSC0003DMT400067845	Potato	cytosol, plastid	83.28	83.78
VIT_14s0006g02620.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	81.23	80.99
AT1G66900.1	Thale cress	cytosol	62.76	78.68
Bra030401.1-P	Field mustard	cytosol	62.46	78.31
Bra034043.1-P	Field mustard	cytosol	62.46	78.31
Bra037774.1-P	Field mustard	cytosol	62.46	78.31
AT5G38220.1	Thale cress	cytosol	72.73	73.81
CDY27016	Canola	plastid	73.9	73.68
KRH18213	Soybean	plastid	76.25	73.65
CDY51065	Canola	plastid	73.9	73.26
Bra028401.1-P	Field mustard	plastid	73.9	73.26
KRG93935	Soybean	plastid	75.37	72.6
GSMUA_Achr8P17940_001	Banana	plastid	66.57	66.18
PGSC0003DMT400068320	Potato	cytosol	54.25	65.84
TraesCS3D01G262400.2	Wheat	plastid	65.98	62.5
TraesCS3B01G295700.1	Wheat	plastid	65.98	61.98
HORVU3Hr1G064120.3	Barley	plastid	65.69	61.88
Os01t0689800-01	Rice	plastid	65.98	61.81
TraesCS3A01G262400.1	Wheat	plastid	65.69	61.54
PGSC0003DMT400068318	Potato	plastid	20.23	61.06
EES01292	Sorghum	plastid	65.98	60.81
Zm00001d043801_P002	Maize	plastid	65.69	60.54
Zm00001d011624_P001	Maize	plastid	64.81	59.73
PGSC0003DMT400008297	Potato	cytosol	49.56	57.29
PGSC0003DMT400017818	Potato	cytosol	61.88	56.87
PGSC0003DMT400039199	Potato	cytosol	61.58	56.6
PGSC0003DMT400003495	Potato	plastid	61.0	55.17
PGSC0003DMT400050553	Potato	cytosol	49.85	45.82
PGSC0003DMT400006166	Potato	plasma membrane, plastid	46.92	41.03
Zm00001d042401_P001	Maize	plastid	46.04	32.44

Protein Annotations

EnsemblPlants:PGSC0003DMT400006272	EnsemblPlantsGene:PGSC0003DMG400002447	EntrezGene:102583447	Gene3D:3.40.50.1820	InterPro:AB_hydrolase	InterPro:Hydrolase_4
InterPro:IPR029058	MEROPS:S09.A25	PANTHER:PTHR12277	PANTHER:PTHR12277:SF124	PFAM:PF12146	PGSC:PGSC0003DMG400002447
RefSeq:XP_006358060.1	SEG:seg	SUPFAM:SSF53474	UniParc:UPI0002960A48	UniProt:M0ZR22	MapMan:35.2

Description

Cgi67 serine protease [Source:PGSC_GENE;Acc:PGSC0003DMG400002447]

Coordinates

chr3:-:4768008..4774765

Molecular Weight (calculated)

37886.6 Da

IEP (calculated)

9.222

GRAVY (calculated)

-0.343

Length

341 amino acids

Sequence
(BLAST)

001: MGGVTSSIAA KFAFFPPNPP SYTVVSDKSC GGKLCIPEIP RRENVDVLKL RTHRGNEIVA VYVKHPKASA SMLYSHGNAA DLGQMFELFV ELSLRLRVNL
101: MGYDYSGYGQ STGKTSECNT YADIDAVYKC LKEQYEVKDE QLILYGQSVG SGPTVDLASH TPNLRAVVLH GPILSGLRVL YPLKHTHWFD IYKNVEKISL
201: VNCPVLVIHG TADEVVDCSH GKQLYELCKE KYEPLWINGG GHCNLELYPV YIKHLKKFVL GLGKSKTATN GSHKPSLVSD TKKPAESVSS NTLNLHSDLP
301: EISRNSLDSR LDKAKKSNKP EKSRMSTGCV DRFRRRKGLV W

Best Arabidopsis Sequence Match ( AT5G38220.1 )
(BLAST)

001: MGGVTSSIAA KFAFFPPSPP SYGFVSDVDR LYITEVPRRD DVDVLKLKTR RGNEIVAIYI KHPKANGTLL YSHGNAADLG QMFELFIELS NRLRLNLMGY
101: DYSGYGQSTG KASECNTYAD IDAAYTCLKE HYGVKDDQLI LYGQSVGSGP TIDLASRTPN LRGVVLHSPI LSGMRVLYPV KRTYWFDIYK NIDKIGAVTC
201: PVLVIHGTAD EVVDCSHGKQ LWELSKEKYE PLWVSGGGHC NLELYPEFIK HLKKYVISIS KGPRTGSNKT ATTDAAKKQS KPAENGRADT FQLGCCLPEV
301: SRNSVDSQLE KSKKTSKPEK SRMSIDRFRR KKGSVW

Arabidopsis Description

Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FF34]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.