Factsheet for TraesCS3A01G262400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G215300.1
TraesCS1B01G228800.1
TraesCS1D01G217800.1
TraesCS2A01G229600.2
TraesCS2B01G251300.1
TraesCS2D01G233500.1
TraesCS6A01G262200.1
TraesCS6B01G289500.1
TraesCS6D01G243000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38220.1	TraesCS2A01G229600.2	AT1G30860.1	21798944
AT5G38220.1	TraesCS2B01G251300.1	AT1G30860.1	21798944
AT5G38220.1	TraesCS2D01G233500.1	AT1G30860.1	21798944
AT5G38220.1	TraesCS1A01G215300.1	AT4G17680.1	21798944
AT5G38220.1	TraesCS1B01G228800.1	AT4G17680.1	21798944
AT5G38220.1	TraesCS1D01G217800.1	AT4G17680.1	21798944
AT5G38220.1	TraesCS6A01G262200.1	AT4G17680.1	21798944
AT5G38220.1	TraesCS6B01G289500.1	AT4G17680.1	21798944
AT5G38220.1	TraesCS6D01G243000.1	AT4G17680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G295700.1	Wheat	plastid	99.18	99.45
HORVU3Hr1G064120.3	Barley	plastid	98.9	99.45
TraesCS3D01G262400.2	Wheat	plastid	98.08	99.17
Os01t0689800-01	Rice	plastid	88.46	88.46
EES01292	Sorghum	plastid	86.26	84.86
Zm00001d011624_P001	Maize	plastid	85.99	84.59
Zm00001d043801_P002	Maize	plastid	84.89	83.51
AT1G66900.1	Thale cress	cytosol	54.12	72.43
GSMUA_Achr8P17940_001	Banana	plastid	64.29	68.22
PGSC0003DMT400067845	Potato	cytosol, plastid	63.19	67.85
Solyc02g086220.2.1	Tomato	cytosol, plastid	62.64	67.06
VIT_14s0006g02620.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	62.36	66.37
PGSC0003DMT400006272	Potato	plastid	61.54	65.69
Solyc03g034270.2.1	Tomato	plastid	60.71	65.0
KRH18213	Soybean	plastid	62.36	64.31
CDY27016	Canola	plastid	59.89	63.74
KRG93935	Soybean	plastid	61.81	63.56
AT5G38220.1	Thale cress	cytosol	58.52	63.39
CDY51065	Canola	plastid	59.89	63.37
Bra014940.1-P	Field mustard	cytosol	14.01	62.96
TraesCS6A01G360000.1	Wheat	cytosol	47.53	62.68
Bra004197.1-P	Field mustard	cytosol	13.46	60.49
PGSC0003DMT400062645	Potato	mitochondrion	61.81	56.82
TraesCS7A01G391300.1	Wheat	plastid	56.04	53.26
TraesCS6A01G170900.1	Wheat	plastid	55.77	51.26
TraesCS7A01G298400.1	Wheat	plastid	48.08	50.58

Protein Annotations

EnsemblPlants:TraesCS3A01G262400.1	EnsemblPlantsGene:TraesCS3A01G262400	Gene3D:3.40.50.1820	InterPro:AB_hydrolase	InterPro:Hydrolase_4	InterPro:IPR029058
PANTHER:PTHR12277	PANTHER:PTHR12277:SF118	PFAM:PF12146	SEG:seg	SUPFAM:SSF53474	MapMan:35.2

Description

No Description!

Coordinates

chr3A:-:485012163..485015178

Molecular Weight (calculated)

40424.2 Da

IEP (calculated)

9.621

GRAVY (calculated)

-0.423

Length

364 amino acids

Sequence
(BLAST)

001: MGGVTSTIAA RFAFFPPTPP SYTLVADAAT GRLLIPEISR PPARRRRRDG GGDSSSGAAA AAEEEDATEV VRLRTRRGNE IVAVYVRHAR ASATLLYSHG
101: NAADLGQMYG LFVELSRRLR VNIFGYDYAG YGRSTGKPTE YNTYADIEAA YNCLKEKYGV PDEDIILYGQ SVGSGPTIDL ASRLPNLRAV VLHSPILSGL
201: RVLYPVKKTF WFDIYKNVDK ISLVNCPVLV IHGTSDDVVD WSHGKQLWEL CKVKHSPLWL SGGGHCNLEL YPDYIRHLKK FVSSLGKKST KPDLKELPAT
301: EDTSRKDAES VSSDKPQEAA KCRQISRKSL DSRVGKSKTV DVPEKPRMSS DDVDKFRRRR CLVW

Best Arabidopsis Sequence Match ( AT5G38220.1 )
(BLAST)

001: MGGVTSSIAA KFAFFPPSPP SYGFVSDVDR LYITEVPRRD DVDVLKLKTR RGNEIVAIYI KHPKANGTLL YSHGNAADLG QMFELFIELS NRLRLNLMGY
101: DYSGYGQSTG KASECNTYAD IDAAYTCLKE HYGVKDDQLI LYGQSVGSGP TIDLASRTPN LRGVVLHSPI LSGMRVLYPV KRTYWFDIYK NIDKIGAVTC
201: PVLVIHGTAD EVVDCSHGKQ LWELSKEKYE PLWVSGGGHC NLELYPEFIK HLKKYVISIS KGPRTGSNKT ATTDAAKKQS KPAENGRADT FQLGCCLPEV
301: SRNSVDSQLE KSKKTSKPEK SRMSIDRFRR KKGSVW

Arabidopsis Description

Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FF34]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.