Factsheet for VIT_14s0006g02620.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, plastid, cytosol, plasma membrane, golgi

Predictor Summary:

nucleus 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
mitochondrion 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid, secretory
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g00340.t01
VIT_02s0012g00290.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38220.1	VIT_01s0010g00340.t01	AT1G30860.1	21798944
AT5G38220.1	VIT_02s0012g00290.t01	AT4G17680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400067845	Potato	cytosol, plastid	84.8	85.55
Solyc02g086220.2.1	Tomato	cytosol, plastid	84.21	84.71
AT1G66900.1	Thale cress	cytosol	65.79	82.72
Bra030401.1-P	Field mustard	cytosol	65.5	82.35
Bra034043.1-P	Field mustard	cytosol	65.5	82.35
Bra037774.1-P	Field mustard	cytosol	65.5	82.35
KRH18213	Soybean	plastid	84.8	82.15
CDY27016	Canola	plastid	81.87	81.87
Bra028401.1-P	Field mustard	plastid	81.87	81.4
CDY51065	Canola	plastid	81.87	81.4
KRG93935	Soybean	plastid	84.21	81.36
AT5G38220.1	Thale cress	cytosol	79.82	81.25
PGSC0003DMT400006272	Potato	plastid	80.99	81.23
Solyc03g034270.2.1	Tomato	plastid	78.95	79.41
PGSC0003DMT400062645	Potato	mitochondrion	80.7	69.7
GSMUA_Achr8P17940_001	Banana	plastid	69.88	69.68
VIT_11s0149g00410.t01	Wine grape	cytosol	40.94	67.63
Os01t0689800-01	Rice	plastid	69.88	65.66
EES01292	Sorghum	plastid	68.71	63.51
TraesCS3D01G262400.2	Wheat	plastid	66.67	63.33
Zm00001d011624_P001	Maize	plastid	68.13	62.97
TraesCS3B01G295700.1	Wheat	plastid	66.67	62.81
HORVU3Hr1G064120.3	Barley	plastid	66.37	62.71
TraesCS3A01G262400.1	Wheat	plastid	66.37	62.36
Zm00001d043801_P002	Maize	plastid	67.25	62.16
VIT_02s0012g02180.t01	Wine grape	mitochondrion, vacuole	37.43	62.14
VIT_14s0219g00290.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	66.37	61.68
VIT_11s0206g00050.t01	Wine grape	cytosol	42.11	60.0
VIT_17s0000g09740.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	64.04	56.59
VIT_01s0010g00670.t01	Wine grape	plastid	62.28	56.05
VIT_14s0083g00800.t01	Wine grape	plastid	63.16	49.09
Zm00001d042401_P001	Maize	plastid	47.66	33.68
VIT_19s0015g01840.t01	Wine grape	plasma membrane	24.85	30.36

Protein Annotations

EntrezGene:100260072	wikigene:100260072	Gene3D:3.40.50.1820	MapMan:35.2	UniProt:A5AR53	InterPro:AB_hydrolase
EMBL:AM432730	ProteinID:CAN82502	ProteinID:CAN82502.1	ProteinID:CCB57698	ProteinID:CCB57698.1	EMBL:FN596245
InterPro:FSH_dom	InterPro:Hydrolase_4	InterPro:IPR029058	EntrezGene:LOC100260072	wikigene:LOC100260072	PFAM:PF03959
PFAM:PF12146	PANTHER:PTHR12277	PANTHER:PTHR12277:SF118	MEROPS:S09.A25	SUPFAM:SSF53474	UniParc:UPI0001523C90
ArrayExpress:VIT_14s0006g02620	EnsemblPlantsGene:VIT_14s0006g02620	EnsemblPlants:VIT_14s0006g02620.t01	RefSeq:XP_002284149	RefSeq:XP_002284149.1	SEG:seg

Description

No Description!

Coordinates

chr14:+:20500800..20518764

Molecular Weight (calculated)

38078.5 Da

IEP (calculated)

8.920

GRAVY (calculated)

-0.363

Length

342 amino acids

Sequence
(BLAST)

001: MGGVTSSIAA KFAFFPPTPA SYVVVADESC GGRLYIPEVP RRDDVDVLKL RTRRGNEIVA VHVKHPKATA TLLYSHGNAA DLGQMFELFV ELSLRLRINL
101: MGYDYSGYGQ STGKPSECNT YADIDAVYKC LKEQYGVKDE QLILYGQSVG SGPTIDLASR VSNLRGVVLH SPILSGLRVL YPVKRTYWFD IYKNIDKIGM
201: VRCPVLVIHG TADEVVDCSH GKQLWELCQE KYEPLWLSGG GHCNLELYPE FIKHLKKFVL TIGKSKAATN GSKKTAVDSD SQSKTSESGT SDAFELSTDL
301: PEASRNSLDS RLEKSKKTNK PEKSRMSTDH VDRFRRRKGL VW

Best Arabidopsis Sequence Match ( AT5G38220.1 )
(BLAST)

001: MGGVTSSIAA KFAFFPPSPP SYGFVSDVDR LYITEVPRRD DVDVLKLKTR RGNEIVAIYI KHPKANGTLL YSHGNAADLG QMFELFIELS NRLRLNLMGY
101: DYSGYGQSTG KASECNTYAD IDAAYTCLKE HYGVKDDQLI LYGQSVGSGP TIDLASRTPN LRGVVLHSPI LSGMRVLYPV KRTYWFDIYK NIDKIGAVTC
201: PVLVIHGTAD EVVDCSHGKQ LWELSKEKYE PLWVSGGGHC NLELYPEFIK HLKKYVISIS KGPRTGSNKT ATTDAAKKQS KPAENGRADT FQLGCCLPEV
301: SRNSVDSQLE KSKKTSKPEK SRMSIDRFRR KKGSVW

Arabidopsis Description

Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FF34]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.