Factsheet for Bra028401.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012650.1-P
Bra023148.1-P
Bra039871.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38220.1	Bra023148.1-P	AT1G30860.1	21798944
AT5G38220.1	Bra039871.1-P	AT1G30860.1	21798944
AT5G38220.1	Bra012650.1-P	AT4G17680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51065	Canola	plastid	100.0	100.0
AT5G38220.1	Thale cress	cytosol	89.53	91.67
Bra037774.1-P	Field mustard	cytosol	65.12	82.35
Bra034043.1-P	Field mustard	cytosol	65.12	82.35
Bra030401.1-P	Field mustard	cytosol	65.12	82.35
VIT_14s0006g02620.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	81.4	81.87
PGSC0003DMT400067845	Potato	cytosol, plastid	78.2	79.35
Solyc02g086220.2.1	Tomato	cytosol, plastid	77.62	78.53
Bra014940.1-P	Field mustard	cytosol	17.73	75.31
Bra004197.1-P	Field mustard	cytosol	17.73	75.31
KRH18213	Soybean	plastid	76.16	74.22
PGSC0003DMT400006272	Potato	plastid	73.26	73.9
KRG93935	Soybean	plastid	75.29	73.16
Solyc03g034270.2.1	Tomato	plastid	71.51	72.35
PGSC0003DMT400062645	Potato	mitochondrion	72.97	63.38
Bra024028.1-P	Field mustard	cytosol	50.87	59.52
Bra007861.1-P	Field mustard	cytosol	50.87	59.52
Bra011242.1-P	Field mustard	cytosol	50.29	58.84
Bra032105.1-P	Field mustard	cytosol	50.29	58.84
Bra010259.1-P	Field mustard	cytosol	49.71	58.16
Bra008761.1-P	Field mustard	endoplasmic reticulum	60.47	56.22
Bra020738.1-P	Field mustard	cytosol, nucleus, plastid	57.85	56.21
Bra013831.1-P	Field mustard	cytosol	59.3	55.74
Bra040729.1-P	Field mustard	plastid	18.02	54.87
Bra025415.1-P	Field mustard	cytosol, nucleus, plastid	58.43	52.76
Bra023463.1-P	Field mustard	cytosol	38.66	48.36
Bra019712.1-P	Field mustard	cytosol	35.76	45.9
Bra040701.1-P	Field mustard	plastid	40.41	42.77
Bra023247.1-P	Field mustard	plastid	47.97	40.15
Bra033847.1-P	Field mustard	plastid	49.42	39.53
Bra019211.1-P	Field mustard	nucleus	59.3	36.96

Protein Annotations

EnsemblPlants:Bra028401.1	EnsemblPlants:Bra028401.1-P	EnsemblPlantsGene:Bra028401	Gene3D:3.40.50.1820	InterPro:AB_hydrolase	InterPro:Hydrolase_4
InterPro:IPR029058	PANTHER:PTHR12277	PANTHER:PTHR12277:SF118	PFAM:PF12146	SEG:seg	SUPFAM:SSF53474
UniParc:UPI0002543230	UniProt:M4EHY6	MapMan:35.2	:	:	:

Description

AT5G38220 (E=4e-163) | hydrolase

Coordinates

chrA02:+:79222..80730

Molecular Weight (calculated)

38505.9 Da

IEP (calculated)

9.296

GRAVY (calculated)

-0.451

Length

344 amino acids

Sequence
(BLAST)

001: MGGVTSSIAA KFAFFPPTPP SYAFITDVSS SSSVDRLYIT DVPRRDDVDV LKLRTRRGNE IVAIYVKHPK ANATLLYSHG NAADLGQMFE LFLELSTRLR
101: LNLMGYDYSG YGQSTGKASE CNTYADIDAS YNCLKEQYGV KDDQLILYGQ SVGSGPTIDL ASRTPNLRGV VLHSPILSGM RVLYPVKRTY WFDIYKNIDK
201: IGSVTCPVLV IHGTADEVVD WSHGKQLWEL SKEKYEPLWV SGGGHCNLEL YPEFIKHLKK FVIFISKPKG PRNGPNNTNP TDATKDQSKP SENGRADTFQ
301: LGCCLPEVSR NSVDSQLEKS KKTNKPEKSR MSVDRFRRKK GLVW

Best Arabidopsis Sequence Match ( AT5G38220.1 )
(BLAST)

001: MGGVTSSIAA KFAFFPPSPP SYGFVSDVDR LYITEVPRRD DVDVLKLKTR RGNEIVAIYI KHPKANGTLL YSHGNAADLG QMFELFIELS NRLRLNLMGY
101: DYSGYGQSTG KASECNTYAD IDAAYTCLKE HYGVKDDQLI LYGQSVGSGP TIDLASRTPN LRGVVLHSPI LSGMRVLYPV KRTYWFDIYK NIDKIGAVTC
201: PVLVIHGTAD EVVDCSHGKQ LWELSKEKYE PLWVSGGGHC NLELYPEFIK HLKKYVISIS KGPRTGSNKT ATTDAAKKQS KPAENGRADT FQLGCCLPEV
301: SRNSVDSQLE KSKKTSKPEK SRMSIDRFRR KKGSVW

Arabidopsis Description

Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FF34]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.