Factsheet for Solyc02g086220.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g082100.2.1
Solyc06g061020.2.1
Solyc08g007120.2.1
Solyc08g077460.2.1
Solyc10g005220.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38220.1	Solyc02g082100.2.1	AT1G30860.1	21798944
AT5G38220.1	Solyc10g005220.2.1	AT1G30860.1	21798944
AT5G38220.1	Solyc06g061020.2.1	AT4G17680.1	21798944
AT5G38220.1	Solyc08g007120.2.1	AT4G17680.1	21798944
AT5G38220.1	Solyc08g077460.2.1	AT4G17680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400067845	Potato	cytosol, plastid	97.94	98.23
VIT_14s0006g02620.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	84.71	84.21
Solyc03g034270.2.1	Tomato	plastid	82.06	82.06
AT1G66900.1	Thale cress	cytosol	63.53	79.41
Bra030401.1-P	Field mustard	cytosol	63.24	79.04
Bra034043.1-P	Field mustard	cytosol	63.24	79.04
Bra037774.1-P	Field mustard	cytosol	63.24	79.04
CDY27016	Canola	plastid	78.53	78.07
Bra028401.1-P	Field mustard	plastid	78.53	77.62
CDY51065	Canola	plastid	78.53	77.62
AT5G38220.1	Thale cress	cytosol	76.47	77.38
KRH18213	Soybean	plastid	80.0	77.05
KRG93935	Soybean	plastid	78.53	75.42
Solyc02g065700.2.1	Tomato	cytosol	56.18	67.97
GSMUA_Achr8P17940_001	Banana	plastid	67.94	67.35
Os01t0689800-01	Rice	plastid	69.12	64.56
TraesCS3D01G262400.2	Wheat	plastid	67.06	63.33
TraesCS3B01G295700.1	Wheat	plastid	67.35	63.09
HORVU3Hr1G064120.3	Barley	plastid	67.06	62.98
TraesCS3A01G262400.1	Wheat	plastid	67.06	62.64
EES01292	Sorghum	plastid	67.65	62.16
Zm00001d043801_P002	Maize	plastid	67.35	61.89
Zm00001d011624_P001	Maize	plastid	66.47	61.08
Solyc07g005130.2.1	Tomato	cytosol	50.59	58.31
Solyc02g067920.2.1	Tomato	cytosol	62.94	57.84
Solyc03g111770.2.1	Tomato	cytosol	62.65	57.41
Solyc02g089320.2.1	Tomato	plastid	60.29	57.1
Solyc05g010680.1.1	Tomato	cytosol	51.18	45.43
Solyc08g076350.2.1	Tomato	plastid	47.35	41.28
Zm00001d042401_P001	Maize	plastid	46.47	32.64

Protein Annotations

EnsemblPlants:Solyc02g086220.2.1	EnsemblPlantsGene:Solyc02g086220.2	Gene3D:3.40.50.1820	InterPro:AB_hydrolase	InterPro:Hydrolase_4	InterPro:IPR029058
MEROPS:S09.A25	PANTHER:PTHR12277	PANTHER:PTHR12277:SF124	PFAM:PF12146	SEG:seg	SUPFAM:SSF53474
UniParc:UPI00027677A5	UniProt:K4BBD0	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr2:-:48948084..48953869

Molecular Weight (calculated)

38036.4 Da

IEP (calculated)

9.138

GRAVY (calculated)

-0.474

Length

340 amino acids

Sequence
(BLAST)

001: MGGVTSSIAA KFAFFPPTPP SYTVVPDDGK FSIPEVARRD GVDFLKLRTR RGNEIVAVHV KHPKASATML YSHGNAADLG QMFELFVELS LRLRVNLMGY
101: DYSGYGQSTG KPSECNTYAD IDAVYKCLKE QYEVKDEQLI IYGQSVGSGP TVDLASRVPN LRGVVLHSPI LSGVRVLYPV KRTYWFDIYK NIDKISAVNC
201: PVLVIHGTAD EVVDYSHGKQ LWELCNEKYE PLWINGGGHC NLELYPEYIK HLKKFVLGLG KPKPAANGPQ KASTESENQS KPAESGSTTD TFDLKPDLPE
301: ISRNSLDSRL EKTKKSNKPE KSRMSTDRVD RFRRRKGLVW

Best Arabidopsis Sequence Match ( AT5G38220.1 )
(BLAST)

001: MGGVTSSIAA KFAFFPPSPP SYGFVSDVDR LYITEVPRRD DVDVLKLKTR RGNEIVAIYI KHPKANGTLL YSHGNAADLG QMFELFIELS NRLRLNLMGY
101: DYSGYGQSTG KASECNTYAD IDAAYTCLKE HYGVKDDQLI LYGQSVGSGP TIDLASRTPN LRGVVLHSPI LSGMRVLYPV KRTYWFDIYK NIDKIGAVTC
201: PVLVIHGTAD EVVDCSHGKQ LWELSKEKYE PLWVSGGGHC NLELYPEFIK HLKKYVISIS KGPRTGSNKT ATTDAAKKQS KPAENGRADT FQLGCCLPEV
301: SRNSVDSQLE KSKKTSKPEK SRMSIDRFRR KKGSVW

Arabidopsis Description

Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FF34]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.