CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 7
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER99396
EES05709
KXG38894

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38220.1	EER99396	AT1G30860.1	21798944
AT5G38220.1	EES05709	AT4G17680.1	21798944
AT5G38220.1	KXG38894	AT4G17680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043801_P002	Maize	plastid	93.51	93.51
Os01t0689800-01	Rice	plastid	87.84	89.29
HORVU3Hr1G064120.3	Barley	plastid	84.86	86.74
TraesCS3B01G295700.1	Wheat	plastid	84.86	86.5
TraesCS3D01G262400.2	Wheat	plastid	84.05	86.39
TraesCS3A01G262400.1	Wheat	plastid	84.86	86.26
AT1G66900.1	Thale cress	cytosol	52.97	72.06
GSMUA_Achr8P17940_001	Banana	plastid	63.78	68.8
VIT_14s0006g02620.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	63.51	68.71
PGSC0003DMT400067845	Potato	cytosol, plastid	62.7	68.44
Solyc02g086220.2.1	Tomato	cytosol, plastid	62.16	67.65
PGSC0003DMT400006272	Potato	plastid	60.81	65.98
AT5G38220.1	Thale cress	cytosol	59.46	65.48
KRH18213	Soybean	plastid	62.43	65.44
Solyc03g034270.2.1	Tomato	plastid	59.73	65.0
KRG93935	Soybean	plastid	62.16	64.97
CDY51065	Canola	plastid	60.0	64.53
CDY27016	Canola	plastid	59.46	64.33
Bra014940.1-P	Field mustard	cytosol	13.78	62.96
Bra004197.1-P	Field mustard	cytosol	13.24	60.49
PGSC0003DMT400062645	Potato	mitochondrion	61.08	57.07
KXG31273	Sorghum	plastid	46.49	56.58
OQU76743	Sorghum	cytosol, mitochondrion	47.57	55.7
OQU79022	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	53.78	54.22
EES06425	Sorghum	plastid	55.41	50.12
KXG25721	Sorghum	cytosol	53.51	48.06
EES14598	Sorghum	plastid	45.95	46.45

Protein Annotations

EnsemblPlants:EES01292	EnsemblPlantsGene:SORBI_3003G262500	EntrezGene:8068039	Gene3D:3.40.50.1820	InterPro:AB_hydrolase	InterPro:Hydrolase_4
InterPro:IPR029058	PANTHER:PTHR12277	PANTHER:PTHR12277:SF118	PFAM:PF12146	ProteinID:EES01292	ProteinID:EES01292.1
ProteinID:OQU87358.1	RefSeq:XP_002456172.1	SEG:seg	SUPFAM:SSF53474	unigene:Sbi.16861	UniParc:UPI0001A846D1
UniProt:C5XGV3	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:60047070..60051565

Molecular Weight (calculated)

40727.4 Da

IEP (calculated)

9.515

GRAVY (calculated)

-0.425

Length

370 amino acids

Sequence
(BLAST)

001: MGGVTSNIAA RFAFFPPTPP SYTVVVADAA TGRLAIPEIS RGPSRRRRRD GAGGSSSSSA SSVAAAGAEE EDGAEVVRLR TRRGNEIVGV YVRHARASAT
101: MLYSHGNAAD LGQMYGLFVE LSRRLRVNLF GYDYSGYGRS TGKPTECNTY ADIEAAYNCL KEKYGVADED IILYGQSVGS GPTIDLASRL PDLRAVVLHS
201: PILSGLRVLY PVKRTFWFDI YKNIDKIGLV NCPVLVIHGT SDDVVDCSHG KQLWEHCKVK YSPLWLSGGG HCNLELYPDY IKHLKKFVSS VSKKTSKPEP
301: KEITAKDGTT SKETKEAYSE KPQEATKCSQ ISRKSLDSRV GKSKTVDVPD KPRMSSDDID KFRRRRCLVW

Best Arabidopsis Sequence Match ( AT5G38220.1 )
(BLAST)

001: MGGVTSSIAA KFAFFPPSPP SYGFVSDVDR LYITEVPRRD DVDVLKLKTR RGNEIVAIYI KHPKANGTLL YSHGNAADLG QMFELFIELS NRLRLNLMGY
101: DYSGYGQSTG KASECNTYAD IDAAYTCLKE HYGVKDDQLI LYGQSVGSGP TIDLASRTPN LRGVVLHSPI LSGMRVLYPV KRTYWFDIYK NIDKIGAVTC
201: PVLVIHGTAD EVVDCSHGKQ LWELSKEKYE PLWVSGGGHC NLELYPEFIK HLKKYVISIS KGPRTGSNKT ATTDAAKKQS KPAENGRADT FQLGCCLPEV
301: SRNSVDSQLE KSKKTSKPEK SRMSIDRFRR KKGSVW

Arabidopsis Description

Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FF34]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.