CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90458
CDY02344
CDY09519
CDY09609
CDY12454
CDY52188

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38220.1	CDY02344	AT1G30860.1	21798944
AT5G38220.1	CDY09519	AT1G30860.1	21798944
AT5G38220.1	CDY12454	AT1G30860.1	21798944
AT5G38220.1	CDY52188	AT1G30860.1	21798944
AT5G38220.1	CDX90458	AT4G17680.1	21798944
AT5G38220.1	CDY09609	AT4G17680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51065	Canola	plastid	97.37	96.8
AT5G38220.1	Thale cress	cytosol	90.35	91.96
VIT_14s0006g02620.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	81.87	81.87
PGSC0003DMT400067845	Potato	cytosol, plastid	78.66	79.35
Solyc02g086220.2.1	Tomato	cytosol, plastid	78.07	78.53
KRH18213	Soybean	plastid	76.9	74.5
PGSC0003DMT400006272	Potato	plastid	73.68	73.9
KRG93935	Soybean	plastid	76.02	73.45
Solyc03g034270.2.1	Tomato	plastid	71.93	72.35
GSMUA_Achr8P17940_001	Banana	plastid	66.67	66.47
CDY37504	Canola	cytosol	14.33	64.47
CDY37505	Canola	cytosol, extracellular	12.57	64.18
PGSC0003DMT400062645	Potato	mitochondrion	73.39	63.38
CDY20302	Canola	cytosol	48.83	63.26
CDX91066	Canola	plastid	59.36	61.89
Os01t0689800-01	Rice	plastid	64.91	60.99
TraesCS3D01G262400.2	Wheat	plastid	63.45	60.28
TraesCS3A01G262400.1	Wheat	plastid	63.74	59.89
CDY55247	Canola	cytosol	51.46	59.86
TraesCS3B01G295700.1	Wheat	plastid	63.45	59.78
HORVU3Hr1G064120.3	Barley	plastid	63.16	59.67
Zm00001d011624_P001	Maize	plastid	64.33	59.46
EES01292	Sorghum	plastid	64.33	59.46
CDY34778	Canola	cytosol	50.88	59.18
Zm00001d043801_P002	Maize	plastid	63.74	58.92
CDX68717	Canola	cytosol	50.58	58.84
CDY28238	Canola	cytosol	50.58	58.84
CDY20301	Canola	cytosol	50.58	58.64
CDX72285	Canola	cytosol	50.29	58.5
CDY13406	Canola	cytosol	50.29	58.5
CDY23273	Canola	cytosol	50.29	58.5
CDY51485	Canola	cytosol	50.0	58.16
CDY31930	Canola	cytosol	10.82	57.81
CDY03421	Canola	cytosol	59.65	56.82
CDY09851	Canola	plastid	61.4	56.76
CDX69584	Canola	endoplasmic reticulum	61.11	56.49
CDY32850	Canola	cytosol	56.73	56.4
CDY34308	Canola	cytosol	59.65	55.74
CDY46139	Canola	cytosol	40.94	55.56
CDX77081	Canola	plastid	33.63	54.5
CDY28668	Canola	cytosol, endoplasmic reticulum, nucleus, plastid	57.02	54.02
CDY28862	Canola	cytosol, endoplasmic reticulum, nucleus, plastid	57.02	54.02
CDX85290	Canola	cytosol, nucleus, plastid	59.65	53.4
CDY35777	Canola	cytosol	58.48	53.05
CDX86348	Canola	cytosol, nucleus, plastid	58.77	52.62
CDX85599	Canola	cytosol	38.6	50.57
CDX98113	Canola	plastid	52.63	49.45
CDY56180	Canola	plastid	52.34	49.31
CDY35552	Canola	plastid	49.42	48.42
CDX92650	Canola	cytosol	60.23	47.47
CDY11031	Canola	cytosol, plastid	30.41	43.51
CDY12257	Canola	plastid	48.83	40.63
CDY22593	Canola	plastid	48.83	40.63
CDY43012	Canola	plastid	49.71	39.44
CDY53272	Canola	plastid	16.67	36.31
CDY45906	Canola	cytosol	23.1	35.43
Zm00001d042401_P001	Maize	plastid	47.08	33.26

Protein Annotations

EnsemblPlants:CDY27016	EnsemblPlantsGene:GSBRNA2T00036826001	Gene3D:3.40.50.1820	InterPro:AB_hydrolase	InterPro:Hydrolase_4	InterPro:IPR029058
PANTHER:PTHR12277	PANTHER:PTHR12277:SF118	PFAM:PF12146	ProteinID:CDY27016	ProteinID:CDY27016.1	SEG:seg
SUPFAM:SSF53474	UniParc:UPI0004EB35CA	UniProt:A0A078GP19	MapMan:35.2	:	:

Description

BnaC06g12320DBnaC06g12320D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GP19]

Coordinates

chrLK032198:+:550495..552565

Molecular Weight (calculated)

38186.6 Da

IEP (calculated)

9.407

GRAVY (calculated)

-0.458

Length

342 amino acids

Sequence
(BLAST)

001: MGGVTSSIAA KFAFFPPTPP SYGLITDDSS SVDRLYITDV PRRDDVDVLK LRTRRGNEIV AIYVKHPKAN GTLLYSHGNA ADLGQMFELF VELSSRLRLN
101: LMGYDYSGYG QSTGKASECN TYADIDASYS CLKEQYGVKD DQLILYGQSV GSGPTIDLAS RTPNLRGVVL HSPILSGMRV LYPVKRTYWF DIYKNIDKIG
201: SVTCPVLVIH GTADEVVDWS HGKQLWELSK EKYEPLWVSG GGHCNLELYP EFIKHLKKFV IFISKPKGPR NGPNKTNPTD ATKDQSKPSA NGRADTFQLG
301: CCLPEVSRNS VDSQLEKSKK TNKPEKSRMS VDRFRRKKGL VW

Best Arabidopsis Sequence Match ( AT5G38220.1 )
(BLAST)

001: MGGVTSSIAA KFAFFPPSPP SYGFVSDVDR LYITEVPRRD DVDVLKLKTR RGNEIVAIYI KHPKANGTLL YSHGNAADLG QMFELFIELS NRLRLNLMGY
101: DYSGYGQSTG KASECNTYAD IDAAYTCLKE HYGVKDDQLI LYGQSVGSGP TIDLASRTPN LRGVVLHSPI LSGMRVLYPV KRTYWFDIYK NIDKIGAVTC
201: PVLVIHGTAD EVVDCSHGKQ LWELSKEKYE PLWVSGGGHC NLELYPEFIK HLKKYVISIS KGPRTGSNKT ATTDAAKKQS KPAENGRADT FQLGCCLPEV
301: SRNSVDSQLE KSKKTSKPEK SRMSIDRFRR KKGSVW

Arabidopsis Description

Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FF34]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.