Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY02344 | Canola | cytosol | 57.04 | 59.45 |
| CDY52188 | Canola | nucleus | 44.21 | 46.28 |
| CDY12454 | Canola | nucleus | 38.77 | 43.1 |
| AT1G30860.1 | Thale cress | cytosol | 41.98 | 41.23 |
| CDY31650 | Canola | nucleus, plastid | 35.43 | 39.44 |
| CDX84276 | Canola | endoplasmic reticulum, extracellular | 33.75 | 35.75 |
| GSMUA_Achr4P33210_001 | Banana | nucleus | 17.57 | 23.2 |
| VIT_01s0010g00340.t01 | Wine grape | nucleus | 23.57 | 23.18 |
| KRH37161 | Soybean | nucleus | 26.64 | 20.72 |
| KRH12155 | Soybean | nucleus | 26.08 | 20.39 |
| CDX96975 | Canola | cytosol | 19.25 | 20.09 |
| GSMUA_Achr7P00390_001 | Banana | nucleus | 19.25 | 18.98 |
| CDY50063 | Canola | cytosol | 28.17 | 18.38 |
| Solyc10g005220.2.1 | Tomato | nucleus, plastid | 22.59 | 17.2 |
| CDX78978 | Canola | cytosol | 26.64 | 16.87 |
| PGSC0003DMT400029374 | Potato | nucleus, plastid | 23.15 | 16.84 |
| CDY14941 | Canola | nucleus | 14.23 | 16.43 |
| TraesCS2A01G229600.2 | Wheat | nucleus, plastid | 16.88 | 16.37 |
| HORVU2Hr1G048520.1 | Barley | plastid | 14.64 | 16.33 |
| PGSC0003DMT400035458 | Potato | nucleus | 23.43 | 16.23 |
| EER99396 | Sorghum | plastid | 16.74 | 15.54 |
| Zm00001d021532_P001 | Maize | cytosol, plastid | 16.74 | 15.52 |
| TraesCS2B01G251300.1 | Wheat | nucleus, plastid | 15.48 | 15.12 |
| Solyc02g082100.2.1 | Tomato | vacuole | 22.59 | 15.03 |
| Zm00001d006417_P002 | Maize | plastid | 12.27 | 14.99 |
| TraesCS2D01G233500.1 | Wheat | cytosol, plastid | 15.76 | 14.93 |
| Os07t0499800-01 | Rice | nucleus | 15.48 | 14.76 |
| CDY08599 | Canola | nucleus | 9.21 | 9.13 |
| CDY41355 | Canola | nucleus | 8.93 | 8.5 |
| CDY00948 | Canola | cytosol | 8.51 | 8.46 |
| CDX70223 | Canola | cytosol | 9.07 | 8.39 |
| CDY04520 | Canola | cytosol, plastid | 7.67 | 8.11 |
| CDY44857 | Canola | nucleus | 8.65 | 7.98 |
| CDX71406 | Canola | cytosol | 3.49 | 4.47 |
| Os03t0107500-00 | Rice | plasma membrane | 1.95 | 3.84 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | GO:A0A078F969 | UniProt:A0A078F969 | EnsemblPlants:CDY09519 | ProteinID:CDY09519 |
| ProteinID:CDY09519.1 | ncoils:Coil | EnsemblPlantsGene:GSBRNA2T00031094001 | InterPro:IPR001841 | InterPro:IPR013083 | PFAM:PF13920 |
| PFscan:PS50089 | PANTHER:PTHR10044 | PANTHER:PTHR10044:SF103 | SUPFAM:SSF57850 | UniParc:UPI0004EE0F57 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
BnaC05g24000DBnaC05g24000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F969]
Coordinates
chrLK031997:+:16576..19282
Molecular Weight (calculated)
81523.1 Da
IEP (calculated)
5.107
GRAVY (calculated)
-0.972
Length
717 amino acids
Sequence
(BLAST)
(BLAST)
001: MEISSSSQRF GCILRDRNQN AFVCKRNLKA PVKDRHHHHH HHHHELFKSH VSDENSENLV DSWIEALNKK NDSNNGIEKC DDSKRNGASS LVQIWEARLN
101: PSSGGNSPSH NQSTVASSIR GDSGVTVQDS CFSESPSDES DAENGHVEME SHGSVSDSGR VADLIRRLSN EKKLIAGGGG LSTIKTPRPY ISSCSSSEKS
201: SFPMVSCSPR LRGRQAFTDL LMRMERDRHR ELDSLHQRNA VSRFTQRGRL QSMLRLRNLK RCLPIQDQYR SNEKTTRLNR IESGPALLRL REKFRANAVN
301: AAAAPAAADQ RKDHHQSADT SKETEAATEG TRLKKGGINQ EASFAAADAR LCKEEETVNG TVEANVDCLE LQETGGAKTW NDNKFEDKEE KTSQIETPES
401: IQNKLEIKME NCVQEAPETQ GVVHESNEMD QCLEQQENSY LKEWEDQEEY EEEQYYYGEA NNNDWLSKIS RPKSYWEELR KSRYLEVMNT PSDKEDIRRL
501: LEGRTVTDFL ESGLREEIDR LMMSRVQTHS SKHSEKWEHE QEEEEEQNNE VVEEVDEEEE EPLTEGEEQD DRDDSSRASS HIFASSPAGS WSSQDTEVTS
601: STPVLSVHNP RSPEMELISD MRAQIQQLHQ EMSLLRDSVK TCLDANGSLQ QSFHGENQMK RKCCVCDQTQ VEAVLYMCGH MCTCLKCANE LHWSGGKCPI
701: CRAQIMDVVR VFFDTRN
101: PSSGGNSPSH NQSTVASSIR GDSGVTVQDS CFSESPSDES DAENGHVEME SHGSVSDSGR VADLIRRLSN EKKLIAGGGG LSTIKTPRPY ISSCSSSEKS
201: SFPMVSCSPR LRGRQAFTDL LMRMERDRHR ELDSLHQRNA VSRFTQRGRL QSMLRLRNLK RCLPIQDQYR SNEKTTRLNR IESGPALLRL REKFRANAVN
301: AAAAPAAADQ RKDHHQSADT SKETEAATEG TRLKKGGINQ EASFAAADAR LCKEEETVNG TVEANVDCLE LQETGGAKTW NDNKFEDKEE KTSQIETPES
401: IQNKLEIKME NCVQEAPETQ GVVHESNEMD QCLEQQENSY LKEWEDQEEY EEEQYYYGEA NNNDWLSKIS RPKSYWEELR KSRYLEVMNT PSDKEDIRRL
501: LEGRTVTDFL ESGLREEIDR LMMSRVQTHS SKHSEKWEHE QEEEEEQNNE VVEEVDEEEE EPLTEGEEQD DRDDSSRASS HIFASSPAGS WSSQDTEVTS
601: STPVLSVHNP RSPEMELISD MRAQIQQLHQ EMSLLRDSVK TCLDANGSLQ QSFHGENQMK RKCCVCDQTQ VEAVLYMCGH MCTCLKCANE LHWSGGKCPI
701: CRAQIMDVVR VFFDTRN
001: MVSSPQRFGL ILRDRNQNAG VFQKNLKSPV KEVLKSHVSD ENLVDSWIET HNNKNNRVLE SPLESKRNDN LVASSLVQIW EARLNRSNGG NSPSSSQSTA
101: SSSSRSDSGV SVQDSGLSES SSIDGDSEIA DRTVEIESRS HGLVSDSGES KWGRVADLIR RLSNEDKKRT AGDNGSGGGG GLEIIRTPRP YCTSSSSEKS
201: NFPVVSFSPK IRGRQAFTDF LMQMERDRHR ELDSLFERNA VSRFTQRGRL QSMLRLRNLN RCLVIQDRNR SNAKTTGLNR IESGSAVLHL REKFHANVVN
301: SAAATDKRKN HQRSTEMNNK SVEETEGTTT TSTRLKDGGV TLEAFFAERL RPRNRKIEEA TLCKEEESVS GTVDSQKNCL QLQETREVEE TCNDGKSEKK
401: EEENTSPSEY LSRESRLRQN QDENNVGKYM QETRETEGLV HESNEMDQCL DQQETSYLNR WGEQEEYADE QSYYGEYNDD WLSEIARPRS YWEELRKSRY
501: LEVMNTRSEK DDICRLLERR TVTDFLDSGL REKIDNLMMS RVQTHSDKHS KKWELQQEEE EEVNFEIDEE IKEEPLRGGE EQDDRDDLSQ SSSSHISASS
601: PAGSWSSQDT DVTSTPALVV QNPQSPEMEL ISGMRSQIQQ LQQEMSVLRD SVKTCLDANA SLQHKAHQEN PMKRKCCVCD ETQVEAVLYR CGHMCMCLKC
701: ANELHWSGGK CPICRAQIVD VVRVIYDTRN
101: SSSSRSDSGV SVQDSGLSES SSIDGDSEIA DRTVEIESRS HGLVSDSGES KWGRVADLIR RLSNEDKKRT AGDNGSGGGG GLEIIRTPRP YCTSSSSEKS
201: NFPVVSFSPK IRGRQAFTDF LMQMERDRHR ELDSLFERNA VSRFTQRGRL QSMLRLRNLN RCLVIQDRNR SNAKTTGLNR IESGSAVLHL REKFHANVVN
301: SAAATDKRKN HQRSTEMNNK SVEETEGTTT TSTRLKDGGV TLEAFFAERL RPRNRKIEEA TLCKEEESVS GTVDSQKNCL QLQETREVEE TCNDGKSEKK
401: EEENTSPSEY LSRESRLRQN QDENNVGKYM QETRETEGLV HESNEMDQCL DQQETSYLNR WGEQEEYADE QSYYGEYNDD WLSEIARPRS YWEELRKSRY
501: LEVMNTRSEK DDICRLLERR TVTDFLDSGL REKIDNLMMS RVQTHSDKHS KKWELQQEEE EEVNFEIDEE IKEEPLRGGE EQDDRDDLSQ SSSSHISASS
601: PAGSWSSQDT DVTSTPALVV QNPQSPEMEL ISGMRSQIQQ LQQEMSVLRD SVKTCLDANA SLQHKAHQEN PMKRKCCVCD ETQVEAVLYR CGHMCMCLKC
701: ANELHWSGGK CPICRAQIVD VVRVIYDTRN
Arabidopsis Description
At1g30860 [Source:UniProtKB/TrEMBL;Acc:Q6NQ80]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.