Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY44857 | Canola | nucleus | 94.19 | 93.95 |
| Bra009452.1-P | Field mustard | nucleus | 96.13 | 89.01 |
| AT5G04460.1 | Thale cress | nucleus | 76.26 | 68.48 |
| CDY08599 | Canola | nucleus | 53.81 | 57.68 |
| CDY41355 | Canola | nucleus | 55.74 | 57.37 |
| CDY00948 | Canola | cytosol | 50.58 | 54.37 |
| KRG92104 | Soybean | nucleus | 59.35 | 54.25 |
| VIT_13s0019g05390.t01 | Wine grape | nucleus | 59.35 | 53.3 |
| KRH34682 | Soybean | nucleus | 58.19 | 53.12 |
| Solyc11g007910.1.1 | Tomato | nucleus | 57.42 | 53.1 |
| PGSC0003DMT400070376 | Potato | nucleus | 57.55 | 51.62 |
| PGSC0003DMT400043571 | Potato | nucleus | 55.87 | 50.41 |
| Solyc03g071670.1.1 | Tomato | nucleus | 26.97 | 46.76 |
| CDY04520 | Canola | cytosol, plastid | 33.29 | 38.05 |
| CDX71406 | Canola | cytosol | 21.03 | 29.16 |
| CDY12454 | Canola | nucleus | 8.77 | 10.54 |
| CDY31650 | Canola | nucleus, plastid | 8.39 | 10.09 |
| CDY52188 | Canola | nucleus | 8.9 | 10.07 |
| CDY09519 | Canola | nucleus | 8.39 | 9.07 |
| CDY02344 | Canola | cytosol | 7.87 | 8.87 |
| CDX84276 | Canola | endoplasmic reticulum, extracellular | 7.61 | 8.71 |
| CDY14941 | Canola | nucleus | 6.58 | 8.21 |
| CDX96975 | Canola | cytosol | 6.58 | 7.42 |
| CDY50063 | Canola | cytosol | 8.9 | 6.28 |
| CDX78978 | Canola | cytosol | 8.26 | 5.65 |
Protein Annotations
| EnsemblPlants:CDX70223 | EnsemblPlantsGene:GSBRNA2T00136352001 | Gene3D:3.30.40.10 | GO:A0A078C5F9 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR10044 | PANTHER:PTHR10044:SF106 | PFAM:PF13920 |
| PFscan:PS50089 | ProteinID:CDX70223 | ProteinID:CDX70223.1 | SEG:seg | SUPFAM:SSF57850 | UniParc:UPI0004EEBC46 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaA10g25720D
Coordinates
chrLK031790:-:3629610..3633247
Molecular Weight (calculated)
89590.9 Da
IEP (calculated)
5.614
GRAVY (calculated)
-1.183
Length
775 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSIQPLQQK SDSRDDARAE FERGFEEFMR GHLDDCISFH NQEDEDDDDD DEEDQLVRRR GESSRRRQSQ ILSRWAARQA QEMITTIERR NRESELIALA
101: GLQTVSMLDS SFLRESQSTT TRRQERPRPR PRTQTASSGI LQMWRELEDE HHVDNNNNNN ASSREQSPDL GDGERERERV RHIVRGWMDS GINDHSSSVT
201: QRDNNNNRRG EWLGDTERER VRVIREWMQV TSQQRGGGGG RANNEEGGQP QQVRRDLRRL RGRQALLDLL TRAERERQRE LQGLLEHRAV SDFAHRNRIQ
301: SLLRGRFLRN ERPADQERTP STASRELLQL RERQTVSGLR EGFHNGRESI VRENSSDTDN NSTAALAIDA TAENSQHITD DSSATSSRQG NNSPLLHDDS
401: VRSESNITNE DRDWEEDTNQ RRVWQEDVTV DERLNLQQTT LTQSSDWGNG NADINNDETS VSDLHREASG ITDDEDHTQE GHGVWHEDVP RQSNGNWNET
501: RPEAPRTRRV VPLRRLSRFH PPEDDNVYSM ELRELLGRRS VSNLLHSGFR ESLDQLIQSY AERRVHTHDD WDLHDNLQTA IPDSPERDRD HQVFVQNDNQ
601: LNDINGPQML PTPPVPPPQP IWHHSSWSRH SMHRSEMEWE VMNDLRGDVA RLQQGMSQMQ RMLEACMDMQ LELQRSVRQE VSAALNRSAG DQAGMSAETS
701: EDGSRWIHVR KGTCCVCCDN HIDALLYRCG HMCTCSQCAN ELVRNGGKCP LCRAPIMEAR RRYIEGMKQH KGKSE
101: GLQTVSMLDS SFLRESQSTT TRRQERPRPR PRTQTASSGI LQMWRELEDE HHVDNNNNNN ASSREQSPDL GDGERERERV RHIVRGWMDS GINDHSSSVT
201: QRDNNNNRRG EWLGDTERER VRVIREWMQV TSQQRGGGGG RANNEEGGQP QQVRRDLRRL RGRQALLDLL TRAERERQRE LQGLLEHRAV SDFAHRNRIQ
301: SLLRGRFLRN ERPADQERTP STASRELLQL RERQTVSGLR EGFHNGRESI VRENSSDTDN NSTAALAIDA TAENSQHITD DSSATSSRQG NNSPLLHDDS
401: VRSESNITNE DRDWEEDTNQ RRVWQEDVTV DERLNLQQTT LTQSSDWGNG NADINNDETS VSDLHREASG ITDDEDHTQE GHGVWHEDVP RQSNGNWNET
501: RPEAPRTRRV VPLRRLSRFH PPEDDNVYSM ELRELLGRRS VSNLLHSGFR ESLDQLIQSY AERRVHTHDD WDLHDNLQTA IPDSPERDRD HQVFVQNDNQ
601: LNDINGPQML PTPPVPPPQP IWHHSSWSRH SMHRSEMEWE VMNDLRGDVA RLQQGMSQMQ RMLEACMDMQ LELQRSVRQE VSAALNRSAG DQAGMSAETS
701: EDGSRWIHVR KGTCCVCCDN HIDALLYRCG HMCTCSQCAN ELVRNGGKCP LCRAPIMEAR RRYIEGMKQH KGKSE
001: MTSIQPLLQK SESRDDVRAE FERGLEEFMR GHLDECISFG SCSSVHNPED EDNEDDQLVR RRRRSELEGD NLAESSAARR RQSQILSRWA ARQAQEMITT
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIEWEVM NDLRGDVARL QQGMSQMQRM LEACMDMQLE LQRSVRQEVS AALNRSAGDQ GMSAETSEDG
801: SRWSHVSKGT CCVCCDNHID ALLYRCGHMC TCSKCANELV RNGGKCPLCR APIIEVIRAY SIL
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIEWEVM NDLRGDVARL QQGMSQMQRM LEACMDMQLE LQRSVRQEVS AALNRSAGDQ GMSAETSEDG
801: SRWSHVSKGT CCVCCDNHID ALLYRCGHMC TCSKCANELV RNGGKCPLCR APIIEVIRAY SIL
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JWA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.