Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013447.1-P | Field mustard | nucleus | 81.63 | 74.76 |
| CDY50063 | Canola | cytosol | 55.48 | 57.14 |
| AT4G20160.2 | Thale cress | cytosol | 34.19 | 31.9 |
| CDY31650 | Canola | nucleus, plastid | 17.31 | 30.43 |
| CDX84276 | Canola | endoplasmic reticulum, extracellular | 18.2 | 30.43 |
| CDY02344 | Canola | cytosol | 18.02 | 29.65 |
| CDY12454 | Canola | nucleus | 15.81 | 27.75 |
| CDY52188 | Canola | nucleus | 16.52 | 27.3 |
| CDY09519 | Canola | nucleus | 16.87 | 26.64 |
| CDX96975 | Canola | cytosol | 15.99 | 26.35 |
| GSMUA_Achr4P33210_001 | Banana | nucleus | 11.04 | 23.02 |
| VIT_01s0010g00340.t01 | Wine grape | nucleus | 14.31 | 22.22 |
| CDY14941 | Canola | nucleus | 11.31 | 20.61 |
| KRH37161 | Soybean | nucleus | 16.78 | 20.61 |
| KRH12155 | Soybean | nucleus | 16.25 | 20.07 |
| PGSC0003DMT400029374 | Potato | nucleus, plastid | 17.23 | 19.78 |
| Solyc10g005220.2.1 | Tomato | nucleus, plastid | 16.25 | 19.53 |
| PGSC0003DMT400035458 | Potato | nucleus | 16.7 | 18.26 |
| HORVU2Hr1G048520.1 | Barley | plastid | 9.89 | 17.42 |
| TraesCS2A01G229600.2 | Wheat | nucleus, plastid | 11.04 | 16.91 |
| GSMUA_Achr7P00390_001 | Banana | nucleus | 10.78 | 16.78 |
| Solyc02g082100.2.1 | Tomato | vacuole | 15.81 | 16.6 |
| TraesCS2B01G251300.1 | Wheat | nucleus, plastid | 10.51 | 16.21 |
| Os07t0499800-01 | Rice | nucleus | 10.69 | 16.09 |
| TraesCS2D01G233500.1 | Wheat | cytosol, plastid | 10.42 | 15.59 |
| EER99396 | Sorghum | plastid | 10.6 | 15.54 |
| Zm00001d021532_P001 | Maize | cytosol, plastid | 10.6 | 15.52 |
| Zm00001d006417_P002 | Maize | plastid | 7.95 | 15.33 |
| CDY08599 | Canola | nucleus | 6.01 | 9.41 |
| CDY41355 | Canola | nucleus | 6.01 | 9.03 |
| CDY00948 | Canola | cytosol | 5.57 | 8.74 |
| CDY44857 | Canola | nucleus | 5.74 | 8.37 |
| CDX70223 | Canola | cytosol | 5.65 | 8.26 |
| CDY04520 | Canola | cytosol, plastid | 4.77 | 7.96 |
| CDX71406 | Canola | cytosol | 2.56 | 5.19 |
| Os03t0107500-00 | Rice | plasma membrane | 1.41 | 4.38 |
Protein Annotations
| EnsemblPlants:CDX78978 | EnsemblPlantsGene:GSBRNA2T00131491001 | Gene3D:3.30.40.10 | GO:A0A078CUW7 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR10044 | PANTHER:PTHR10044:SF103 | PFAM:PF13920 |
| PFscan:PS50089 | ProteinID:CDX78978 | ProteinID:CDX78978.1 | SEG:seg | SUPFAM:SSF57850 | UniParc:UPI0004EDD5AD |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaA01g10450D
Coordinates
chrLK031816:+:1169856..1174073
Molecular Weight (calculated)
128522.0 Da
IEP (calculated)
4.732
GRAVY (calculated)
-1.097
Length
1132 amino acids
Sequence
(BLAST)
(BLAST)
0001: MMTSDVETSQ AFNYVLSPHE RCIRGDNNNN KKTKNNNSNN NNVRNIHVAF EKNLNVFVRD HLDNVTVASG ENVDESTKAV PESSSNKSSV LKTEEPRLSS
0101: SSIGSDPDPN LPHPGQQDKN TSRKETMPAS SLVQIWEART TSSNQNQPQT DSRTSSSGSN VLENSESLIE EPVKEYEPIQ PIQEGKNEEH REEEIESDSQ
0201: SVSGEKEREG VRVMDIIRKL SSDTEATTGN NDNGSSSNEN GKEVQTTTTE TRTFPQVSCS PRIRGRQAFA DLLIQMMRDR EKELASLLDR HCVTKFTHRG
0301: RIQSTLRIRC YERCIAIQDK YRSKSWAPGS DLNRAGGSDL NRSPRGSGVM HLLKEKNKTN SDNISSSVSS RSRVMEKDPQ KSLEKKVFEE TMEKIDVKEV
0401: QEVVSAVETA KKAVLSELVE NKNGLKKPIG ETTVLSESTE GKSGLKKPIG ETLQKETTEG RGDKGETKEK AIAKENVQGN VLVGIAEKVN RWNSEEKLNR
0501: SRWTEKGKTE TKANTERVDK NDVLEDAKRT SNVQSGEKSN TTCEFPEKEV RRKEKEDCVS VETKSIEIGD PQQGTAQEEE KVVQETTTRN NKNGLKKPTE
0601: KESKEGREME ESVEGNTFMG IAEKVKMWNS KYKKSRRRYS MDRGKGKTGK PNTERNEVLQ EASRRIINLK TEERSITTSK EKVVGTQEIK DKRESSREIM
0701: QCEPEEKGRR MKEEELCSEE AKSKDITEVK IMSSQEVIIP AKESACHGSP ERGKELSASL QGEEMFILQN LEDKSTKETD GNNFQENIIE EDSREKAKEK
0801: NASQQDEEVK EVAIEFANDW DEKEDDDDDD DYEDYGDFDD YIGEISTDWI YDVSRPRSYW EELRKERYLE VLNTESDKKD ICNLIQSRTV SNFLTSDLRQ
0901: KIDNLMTSLV QNHLGVPINQ EEEEDEEEKE EWVEECSARN QEDNETEEEP EKTNLEAASD TILEADHDAC SQSSERSSTL MISWSFRDQD IDKDHEPTAS
1001: LSLPEPSSAT SQTTQEMQMI SDLREQMEQL QREMLELRNT VKSCTDMQLH FQKSSTQDSC RSGSSAEQRV ETKNPLKRKC CVCSEMPVDS LLYRCGHMCT
1101: CLKCAHELQW SSKKCPICMA PIVDVVRAFL DA
0101: SSIGSDPDPN LPHPGQQDKN TSRKETMPAS SLVQIWEART TSSNQNQPQT DSRTSSSGSN VLENSESLIE EPVKEYEPIQ PIQEGKNEEH REEEIESDSQ
0201: SVSGEKEREG VRVMDIIRKL SSDTEATTGN NDNGSSSNEN GKEVQTTTTE TRTFPQVSCS PRIRGRQAFA DLLIQMMRDR EKELASLLDR HCVTKFTHRG
0301: RIQSTLRIRC YERCIAIQDK YRSKSWAPGS DLNRAGGSDL NRSPRGSGVM HLLKEKNKTN SDNISSSVSS RSRVMEKDPQ KSLEKKVFEE TMEKIDVKEV
0401: QEVVSAVETA KKAVLSELVE NKNGLKKPIG ETTVLSESTE GKSGLKKPIG ETLQKETTEG RGDKGETKEK AIAKENVQGN VLVGIAEKVN RWNSEEKLNR
0501: SRWTEKGKTE TKANTERVDK NDVLEDAKRT SNVQSGEKSN TTCEFPEKEV RRKEKEDCVS VETKSIEIGD PQQGTAQEEE KVVQETTTRN NKNGLKKPTE
0601: KESKEGREME ESVEGNTFMG IAEKVKMWNS KYKKSRRRYS MDRGKGKTGK PNTERNEVLQ EASRRIINLK TEERSITTSK EKVVGTQEIK DKRESSREIM
0701: QCEPEEKGRR MKEEELCSEE AKSKDITEVK IMSSQEVIIP AKESACHGSP ERGKELSASL QGEEMFILQN LEDKSTKETD GNNFQENIIE EDSREKAKEK
0801: NASQQDEEVK EVAIEFANDW DEKEDDDDDD DYEDYGDFDD YIGEISTDWI YDVSRPRSYW EELRKERYLE VLNTESDKKD ICNLIQSRTV SNFLTSDLRQ
0901: KIDNLMTSLV QNHLGVPINQ EEEEDEEEKE EWVEECSARN QEDNETEEEP EKTNLEAASD TILEADHDAC SQSSERSSTL MISWSFRDQD IDKDHEPTAS
1001: LSLPEPSSAT SQTTQEMQMI SDLREQMEQL QREMLELRNT VKSCTDMQLH FQKSSTQDSC RSGSSAEQRV ETKNPLKRKC CVCSEMPVDS LLYRCGHMCT
1101: CLKCAHELQW SSKKCPICMA PIVDVVRAFL DA
0001: MEMASSEVEM SSCQTFNCVL SRPHERCTQR DNNTNNNKKK NNNNNNVRNI HVAAFEKNLN VFVRDHLENC SVSVDDVVDD SIKAVPECSS NKSSVSDHRL
0101: SKTEESRQDV PSSSSSLGSD SDPNSGQPEN PSRNAASSLV QIWEARTTQQ PPSSNQSLID SRTSSMGSNA LENSESLESV KESQMIQPIE ECNNEEEEEE
0201: IECAPPPLES GEKDREGVRV MDIIRKLSND SETITNNDNG SSGNDNSKEV QTTEARSFPQ VACSPRIRGR QALADLLVQM TRDREKDLAC LRERHCVSKF
0301: TNRGRIQSTL RIRCYERCLA IQGRHRSKST SAGSDSNRSS RGSGVMHLLR EKYKANSENI ETGASTSHAS TRGRIMDKDP HKATEKKVLQ ETIEKSGVKE
0401: IKEVVSAVEN AKKGVLSEIS ENRNGLKKLA GETIQKETVE GKGEKRETKE KVISKESLEG KGEKRESTKE KAIAKESVAE KALVGIAEKV NLWNSDEKMN
0501: RRKVVEKGKT EGNTNTERVE RNDVLEEATR RILSVESAER SSTTTSKETM TRCEVAEKVV KGKKKEDFVS LESNKSKEVE DGNIKPQGVT TQADSCLRKP
0601: AIEEKVLQET TVKSDLKKPT EKESREERRE IEEEESTSMG IAEKVNLWNS KEKKNRRKAM EKGKGKTEGK AITETNELLQ EASRRISNVE TAERSIDTSW
0701: ITVVKVVGDR VIMDKRKSSG ETTRSAEIGG GKKEEDLASV EAKSKDVIED KNMNPQAVIH GSKERDKERN SSQNGEETLS LRNSEAKSTK EIERQEVTQE
0801: EKSVSHGSRE KDKERNSLQY GEKMCFLRNS EAKSTKEIER NKSQEVSQGE ESASHGSRES AKEKNSSQQD DETSTHRNPN DKKGIKEPED EESKKVEREE
0901: TGENVEEASV EFVNDWDGNE MEEEEEEEYG DYFNGDDDWI HDISRPRSYW EDLRKERYLE VLNTESEKKD ICNLIERRTV SNFLTSDLRQ KIDNLMITRV
1001: QSHIGVPLNQ IEEGDEYEEE WEVECSARNE EDNETEEEPE KTNLEAPSDV CSQSSARSST MMSWNFRDQD IDKDNEPTTS LSLPEPLVPT NQSTQDMQTI
1101: SDLKEQMEQL QREMLELRNT VKSCIDMQLH FQKSVTQDLS RSGSSAEQRV DPKKDPLKRK CCVCSEMPVD SLLYRCGHMC TCLKCAHELQ WSSKKCPICM
1201: APIVDVVRAF LDS
0101: SKTEESRQDV PSSSSSLGSD SDPNSGQPEN PSRNAASSLV QIWEARTTQQ PPSSNQSLID SRTSSMGSNA LENSESLESV KESQMIQPIE ECNNEEEEEE
0201: IECAPPPLES GEKDREGVRV MDIIRKLSND SETITNNDNG SSGNDNSKEV QTTEARSFPQ VACSPRIRGR QALADLLVQM TRDREKDLAC LRERHCVSKF
0301: TNRGRIQSTL RIRCYERCLA IQGRHRSKST SAGSDSNRSS RGSGVMHLLR EKYKANSENI ETGASTSHAS TRGRIMDKDP HKATEKKVLQ ETIEKSGVKE
0401: IKEVVSAVEN AKKGVLSEIS ENRNGLKKLA GETIQKETVE GKGEKRETKE KVISKESLEG KGEKRESTKE KAIAKESVAE KALVGIAEKV NLWNSDEKMN
0501: RRKVVEKGKT EGNTNTERVE RNDVLEEATR RILSVESAER SSTTTSKETM TRCEVAEKVV KGKKKEDFVS LESNKSKEVE DGNIKPQGVT TQADSCLRKP
0601: AIEEKVLQET TVKSDLKKPT EKESREERRE IEEEESTSMG IAEKVNLWNS KEKKNRRKAM EKGKGKTEGK AITETNELLQ EASRRISNVE TAERSIDTSW
0701: ITVVKVVGDR VIMDKRKSSG ETTRSAEIGG GKKEEDLASV EAKSKDVIED KNMNPQAVIH GSKERDKERN SSQNGEETLS LRNSEAKSTK EIERQEVTQE
0801: EKSVSHGSRE KDKERNSLQY GEKMCFLRNS EAKSTKEIER NKSQEVSQGE ESASHGSRES AKEKNSSQQD DETSTHRNPN DKKGIKEPED EESKKVEREE
0901: TGENVEEASV EFVNDWDGNE MEEEEEEEYG DYFNGDDDWI HDISRPRSYW EDLRKERYLE VLNTESEKKD ICNLIERRTV SNFLTSDLRQ KIDNLMITRV
1001: QSHIGVPLNQ IEEGDEYEEE WEVECSARNE EDNETEEEPE KTNLEAPSDV CSQSSARSST MMSWNFRDQD IDKDNEPTTS LSLPEPLVPT NQSTQDMQTI
1101: SDLKEQMEQL QREMLELRNT VKSCIDMQLH FQKSVTQDLS RSGSSAEQRV DPKKDPLKRK CCVCSEMPVD SLLYRCGHMC TCLKCAHELQ WSSKKCPICM
1201: APIVDVVRAF LDS
Arabidopsis Description
LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: RING/U-box superfamily /.../n (TAIR:AT1G30860.1); Has 64917 Blast hits to 39974 proteins in 1949 species: Archae - 279; Bacteria - 7425; Metazoa - 26604; Fungi - 5788; Plants - 3193; Viruses - 275; Other Eukaryotes - 21353 (source: NCBI BLink). [Source:TAIR;Acc:AT4G20160]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.