Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 3
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G251300.1 | Wheat | nucleus, plastid | 47.61 | 48.77 |
| HORVU2Hr1G048520.1 | Barley | plastid | 41.62 | 48.68 |
| TraesCS2A01G229600.2 | Wheat | nucleus, plastid | 47.74 | 48.58 |
| TraesCS2D01G233500.1 | Wheat | cytosol, plastid | 48.27 | 47.95 |
| Zm00001d021532_P001 | Maize | cytosol, plastid | 48.94 | 47.61 |
| EER99396 | Sorghum | plastid | 48.54 | 47.28 |
| Zm00001d006417_P002 | Maize | plastid | 27.93 | 35.78 |
| GSMUA_Achr4P33210_001 | Banana | nucleus | 20.35 | 28.18 |
| GSMUA_Achr7P00390_001 | Banana | nucleus | 22.74 | 23.52 |
| Bra005381.1-P | Field mustard | nucleus | 17.95 | 20.83 |
| CDY31650 | Canola | nucleus, plastid | 16.89 | 19.72 |
| VIT_01s0010g00340.t01 | Wine grape | nucleus | 18.75 | 19.34 |
| CDX84276 | Canola | endoplasmic reticulum, extracellular | 16.36 | 18.17 |
| AT2G34920.2 | Thale cress | nucleus | 15.69 | 17.72 |
| Bra039871.1-P | Field mustard | nucleus | 15.03 | 16.1 |
| CDY52188 | Canola | nucleus | 14.63 | 16.06 |
| AT1G30860.1 | Thale cress | cytosol | 15.56 | 16.03 |
| Bra021939.1-P | Field mustard | nucleus, plastid | 13.16 | 15.89 |
| KRH37161 | Soybean | nucleus | 19.15 | 15.62 |
| CDY12454 | Canola | nucleus | 13.3 | 15.5 |
| CDY09519 | Canola | nucleus | 14.76 | 15.48 |
| Bra023148.1-P | Field mustard | nucleus | 14.49 | 15.46 |
| CDX96975 | Canola | cytosol | 14.1 | 15.43 |
| CDY02344 | Canola | cytosol | 13.7 | 14.97 |
| KRH12155 | Soybean | nucleus | 18.09 | 14.83 |
| Solyc10g005220.2.1 | Tomato | nucleus, plastid | 17.15 | 13.69 |
| PGSC0003DMT400035458 | Potato | nucleus | 17.95 | 13.04 |
| PGSC0003DMT400029374 | Potato | nucleus, plastid | 16.89 | 12.88 |
| Solyc02g082100.2.1 | Tomato | vacuole | 17.82 | 12.43 |
| CDY14941 | Canola | nucleus | 9.57 | 11.59 |
| CDY50063 | Canola | cytosol | 16.36 | 11.19 |
| AT5G44690.1 | Thale cress | nucleus | 9.71 | 11.03 |
| CDX78978 | Canola | cytosol | 16.09 | 10.69 |
| Bra013447.1-P | Field mustard | nucleus | 16.49 | 10.03 |
| AT4G20160.2 | Thale cress | cytosol | 15.82 | 9.81 |
| Os02t0823300-01 | Rice | nucleus | 8.51 | 8.49 |
| Os03t0107500-00 | Rice | plasma membrane | 1.86 | 3.84 |
| Os09t0570500-01 | Rice | nucleus | 2.26 | 3.77 |
Protein Annotations
| EnsemblPlants:Os07t0499800-01 | EnsemblPlantsGene:Os07g0499800 | EntrezGene:4343310 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR42647 | PANTHER:PTHR42647:SF11 | PFAM:PF13920 | PFscan:PS50089 |
| ProteinID:BAF21630.1 | ProteinID:BAT01632.1 | RefSeq:XP_015645311.1 | SEG:seg | SUPFAM:SSF57850 | UniParc:UPI0000E12B29 |
| UniProt:Q0D693 | MapMan:35.2 | : | : | : | : |
Description
RING finger proteinUbiquitin-protein ligase E3 MDM2 domain containing protein. (Os07t0499800-01)
Coordinates
chr7:+:18800968..18806189
Molecular Weight (calculated)
82643.5 Da
IEP (calculated)
6.892
GRAVY (calculated)
-0.678
Length
752 amino acids
Sequence
(BLAST)
(BLAST)
001: MATSSVAAMP HDSTPWRDPS RASSRQPARG FFNILVPPPQ SPRPRCPDHQ HHHHHHHHHD AAGGAAAAAA AAAAEPTPRR RKQILDRWAA AAAAASATAS
101: AEAPAPQEQR RRARDAELSA LASATRPVTA RAAVFREPSP APSDASSGAG AGCGGGAGCG AELPPAAPRA SSLIQRWREI EAVGPATPRP CDLASDSDGG
201: SPRGRVGCIV KKLSGTSSIP DDELDAANKE VAMSQSAPPS PAPMRAGVEP PTNIAGINGS RPTQLVVRTV RGRRAMEELV AMMAHCRRCE LAAVADRHVV
301: SRFSHKGRIQ SMLRLRLLRQ GFKVKDEVWT LPKPVRPRLP KHEHEAYTTS KCIAGNQHKG GQVLAEKSTG SVERLVSSDG LGNEQNDGQN SNSENQCQEG
401: CKNMVKLCTQ NQEYSEPSSF VRYDEHSTVD DVSPSTISTL HELCTPSSRG DNLREEDNQS LNGSWEERAL WISSLGWPAP VEAMSPDSWN QDEIGDIENH
501: TQNEFNDRPW IDSPNSWRSL CVATQADSGA LSGNADICNL LESKNVSKSL ESDFSNKMNN MLLTILRKQR QQHMIDDFEG YYDERLYWRQ NDEQQNADQR
601: VSAQCSLAPV SHLHQQEGWQ HSSFEHQHHE NQNFLEMEVR VRSEMAQVHH EIYELRKLVE SCIASQVKIQ HSIKEEMCSA LREAGLMPSQ PDTPAKRGSC
701: CICHQTQVDS LLYRCGHMCT CFNCADQLKS SNRSCPICQS PIEDVVRAHM NF
101: AEAPAPQEQR RRARDAELSA LASATRPVTA RAAVFREPSP APSDASSGAG AGCGGGAGCG AELPPAAPRA SSLIQRWREI EAVGPATPRP CDLASDSDGG
201: SPRGRVGCIV KKLSGTSSIP DDELDAANKE VAMSQSAPPS PAPMRAGVEP PTNIAGINGS RPTQLVVRTV RGRRAMEELV AMMAHCRRCE LAAVADRHVV
301: SRFSHKGRIQ SMLRLRLLRQ GFKVKDEVWT LPKPVRPRLP KHEHEAYTTS KCIAGNQHKG GQVLAEKSTG SVERLVSSDG LGNEQNDGQN SNSENQCQEG
401: CKNMVKLCTQ NQEYSEPSSF VRYDEHSTVD DVSPSTISTL HELCTPSSRG DNLREEDNQS LNGSWEERAL WISSLGWPAP VEAMSPDSWN QDEIGDIENH
501: TQNEFNDRPW IDSPNSWRSL CVATQADSGA LSGNADICNL LESKNVSKSL ESDFSNKMNN MLLTILRKQR QQHMIDDFEG YYDERLYWRQ NDEQQNADQR
601: VSAQCSLAPV SHLHQQEGWQ HSSFEHQHHE NQNFLEMEVR VRSEMAQVHH EIYELRKLVE SCIASQVKIQ HSIKEEMCSA LREAGLMPSQ PDTPAKRGSC
701: CICHQTQVDS LLYRCGHMCT CFNCADQLKS SNRSCPICQS PIEDVVRAHM NF
0001: MEMASSEVEM SSCQTFNCVL SRPHERCTQR DNNTNNNKKK NNNNNNVRNI HVAAFEKNLN VFVRDHLENC SVSVDDVVDD SIKAVPECSS NKSSVSDHRL
0101: SKTEESRQDV PSSSSSLGSD SDPNSGQPEN PSRNAASSLV QIWEARTTQQ PPSSNQSLID SRTSSMGSNA LENSESLESV KESQMIQPIE ECNNEEEEEE
0201: IECAPPPLES GEKDREGVRV MDIIRKLSND SETITNNDNG SSGNDNSKEV QTTEARSFPQ VACSPRIRGR QALADLLVQM TRDREKDLAC LRERHCVSKF
0301: TNRGRIQSTL RIRCYERCLA IQGRHRSKST SAGSDSNRSS RGSGVMHLLR EKYKANSENI ETGASTSHAS TRGRIMDKDP HKATEKKVLQ ETIEKSGVKE
0401: IKEVVSAVEN AKKGVLSEIS ENRNGLKKLA GETIQKETVE GKGEKRETKE KVISKESLEG KGEKRESTKE KAIAKESVAE KALVGIAEKV NLWNSDEKMN
0501: RRKVVEKGKT EGNTNTERVE RNDVLEEATR RILSVESAER SSTTTSKETM TRCEVAEKVV KGKKKEDFVS LESNKSKEVE DGNIKPQGVT TQADSCLRKP
0601: AIEEKVLQET TVKSDLKKPT EKESREERRE IEEEESTSMG IAEKVNLWNS KEKKNRRKAM EKGKGKTEGK AITETNELLQ EASRRISNVE TAERSIDTSW
0701: ITVVKVVGDR VIMDKRKSSG ETTRSAEIGG GKKEEDLASV EAKSKDVIED KNMNPQAVIH GSKERDKERN SSQNGEETLS LRNSEAKSTK EIERQEVTQE
0801: EKSVSHGSRE KDKERNSLQY GEKMCFLRNS EAKSTKEIER NKSQEVSQGE ESASHGSRES AKEKNSSQQD DETSTHRNPN DKKGIKEPED EESKKVEREE
0901: TGENVEEASV EFVNDWDGNE MEEEEEEEYG DYFNGDDDWI HDISRPRSYW EDLRKERYLE VLNTESEKKD ICNLIERRTV SNFLTSDLRQ KIDNLMITRV
1001: QSHIGVPLNQ IEEGDEYEEE WEVECSARNE EDNETEEEPE KTNLEAPSDV CSQSSARSST MMSWNFRDQD IDKDNEPTTS LSLPEPLVPT NQSTQDMQTI
1101: SDLKEQMEQL QREMLELRNT VKSCIDMQLH FQKSVTQDLS RSGSSAEQRV DPKKDPLKRK CCVCSEMPVD SLLYRCGHMC TCLKCAHELQ WSSKKCPICM
1201: APIVDVVRAF LDS
0101: SKTEESRQDV PSSSSSLGSD SDPNSGQPEN PSRNAASSLV QIWEARTTQQ PPSSNQSLID SRTSSMGSNA LENSESLESV KESQMIQPIE ECNNEEEEEE
0201: IECAPPPLES GEKDREGVRV MDIIRKLSND SETITNNDNG SSGNDNSKEV QTTEARSFPQ VACSPRIRGR QALADLLVQM TRDREKDLAC LRERHCVSKF
0301: TNRGRIQSTL RIRCYERCLA IQGRHRSKST SAGSDSNRSS RGSGVMHLLR EKYKANSENI ETGASTSHAS TRGRIMDKDP HKATEKKVLQ ETIEKSGVKE
0401: IKEVVSAVEN AKKGVLSEIS ENRNGLKKLA GETIQKETVE GKGEKRETKE KVISKESLEG KGEKRESTKE KAIAKESVAE KALVGIAEKV NLWNSDEKMN
0501: RRKVVEKGKT EGNTNTERVE RNDVLEEATR RILSVESAER SSTTTSKETM TRCEVAEKVV KGKKKEDFVS LESNKSKEVE DGNIKPQGVT TQADSCLRKP
0601: AIEEKVLQET TVKSDLKKPT EKESREERRE IEEEESTSMG IAEKVNLWNS KEKKNRRKAM EKGKGKTEGK AITETNELLQ EASRRISNVE TAERSIDTSW
0701: ITVVKVVGDR VIMDKRKSSG ETTRSAEIGG GKKEEDLASV EAKSKDVIED KNMNPQAVIH GSKERDKERN SSQNGEETLS LRNSEAKSTK EIERQEVTQE
0801: EKSVSHGSRE KDKERNSLQY GEKMCFLRNS EAKSTKEIER NKSQEVSQGE ESASHGSRES AKEKNSSQQD DETSTHRNPN DKKGIKEPED EESKKVEREE
0901: TGENVEEASV EFVNDWDGNE MEEEEEEEYG DYFNGDDDWI HDISRPRSYW EDLRKERYLE VLNTESEKKD ICNLIERRTV SNFLTSDLRQ KIDNLMITRV
1001: QSHIGVPLNQ IEEGDEYEEE WEVECSARNE EDNETEEEPE KTNLEAPSDV CSQSSARSST MMSWNFRDQD IDKDNEPTTS LSLPEPLVPT NQSTQDMQTI
1101: SDLKEQMEQL QREMLELRNT VKSCIDMQLH FQKSVTQDLS RSGSSAEQRV DPKKDPLKRK CCVCSEMPVD SLLYRCGHMC TCLKCAHELQ WSSKKCPICM
1201: APIVDVVRAF LDS
Arabidopsis Description
LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: RING/U-box superfamily /.../n (TAIR:AT1G30860.1); Has 64917 Blast hits to 39974 proteins in 1949 species: Archae - 279; Bacteria - 7425; Metazoa - 26604; Fungi - 5788; Plants - 3193; Viruses - 275; Other Eukaryotes - 21353 (source: NCBI BLink). [Source:TAIR;Acc:AT4G20160]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.