Factsheet for Os05t0106600-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 5
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

nucleus: 24133045

msms PMID: 24133045 doi

DK Jaiswal, D Ray, MK Choudhary, P Subba, A Kumar, J Verma, R Kumar, A Datta, S Chakraborty, N Chakraborty

National Institute of Plant Genome Research, New Delhi, India.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0125800-01
Os01t0583100-01
Os01t0866100-01
Os01t0964133-01
Os03t0780400-01
Os03t0836000-01
Os05t0106600-01
Os05t0438800-01
Os05t0537400-00
Os05t0592800-02
Os07t0297500-00
Os10t0521100-01
Os11t0163100-01
Os12t0628100-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G49240.1	Os01t0583100-01	AT1G72770.1	19033529
AT1G49240.1	Os05t0537400-00	AT1G72770.1	19033529
AT1G49240.1	Os05t0592800-02	AT1G72770.1	19033529
AT5G09810.1	Os03t0780400-01	AT2G31200.1	21798944
AT5G09810.1	Os07t0297500-00	AT2G31200.1	21798944
AT5G09810.1	Os10t0521100-01	AT2G31200.1	21798944
AT5G09810.1	Os12t0628100-01	AT2G31200.1	21798944
AT5G09810.1	Os01t0125800-01	AT3G18060.1	21798944
AT5G09810.1	Os01t0866100-01	AT5G09810.1	21798944
AT5G09810.1	Os01t0964133-01	AT5G09810.1	21798944
AT5G09810.1	Os03t0836000-01	AT5G09810.1	21798944
AT5G09810.1	Os05t0106600-01	AT5G09810.1	21798944
AT5G09810.1	Os05t0438800-01	AT5G09810.1	21798944
AT5G09810.1	Os11t0163100-01	AT5G09810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G020000.1	Wheat	cytosol	99.47	99.47
TraesCS1B01G024500.1	Wheat	golgi, nucleus	99.47	99.47
Zm00001d035720_P002	Maize	cytosol	98.94	98.94
Zm00001d011086_P005	Maize	cytosol	98.94	98.94
KXG21029	Sorghum	cytosol	98.94	98.94
Os01t0964133-01	Rice	plasma membrane	98.94	98.94
Os11t0163100-01	Rice	nucleus, plasma membrane, plastid	98.14	98.14
KRH53856	Soybean	endoplasmic reticulum, mitochondrion	86.21	97.89
KRH43389	Soybean	cytosol	97.88	97.88
KRH59535	Soybean	cytosol	97.88	97.88
KRH64098	Soybean	cytosol	97.88	97.88
VIT_12s0178g00200.t01	Wine grape	cytosol	97.61	97.61
AT5G09810.1	Thale cress	cytosol	97.61	97.61
PGSC0003DMT400047481	Potato	cytosol	97.35	97.35
Solyc03g078400.2.1	Tomato	nucleus, plastid	97.35	97.35
CDX69885	Canola	cytosol	97.35	97.35
CDY21607	Canola	cytosol	97.35	97.35
CDX85794	Canola	cytosol	90.98	97.17
CDY30296	Canola	cytosol	90.98	97.17
CDY31972	Canola	cytosol	90.98	97.17
CDY40061	Canola	cytosol	90.98	97.17
Os10t0510000-01	Rice	plastid	97.08	97.08
Bra028615.1-P	Field mustard	cytosol	97.08	97.08
Bra009081.1-P	Field mustard	cytosol	90.72	96.88
Zm00001d035722_P007	Maize	plasma membrane	98.94	96.88
PGSC0003DMT400010174	Potato	cytosol	96.82	96.82
CDY56544	Canola	cytosol	96.82	96.82
CDX81140	Canola	cytosol	96.82	96.82
Os03t0836000-01	Rice	plasma membrane, plastid	96.82	96.82
Solyc11g005330.1.1	Tomato	nucleus	96.82	96.82
Bra006033.1-P	Field mustard	cytosol	96.55	96.55
Solyc01g104770.2.1	Tomato	nucleus	96.55	96.55
Os12t0163700-01	Rice	plastid	92.84	96.42
Os03t0718100-01	Rice	plasma membrane	96.29	96.29
PGSC0003DMT400076499	Potato	cytosol	49.07	95.85
KRH43946	Soybean	endoplasmic reticulum, mitochondrion, nucleus	94.69	94.69
KRH10484	Soybean	endoplasmic reticulum, mitochondrion, nucleus	94.69	94.69
Os05t0438800-01	Rice	plasma membrane, plastid	92.84	93.09
Solyc04g071260.2.1	Tomato	plastid	92.57	92.57
TraesCS1A01G020500.2	Wheat	cytosol	99.47	92.14
HORVU1Hr1G002840.6	Barley	plasma membrane	99.47	92.14
CDX99315	Canola	cytosol	78.78	91.95
AT1G49240.1	Thale cress	cytosol	91.78	91.78
Bra022356.1-P	Field mustard	cytosol	78.51	91.64
CDX95498	Canola	cytosol	91.51	91.51
CDY61982	Canola	cytosol	91.51	91.51
AT3G18780.3	Thale cress	cytosol	91.51	91.51
CDY18545	Canola	cytosol	91.51	91.51
CDX82326	Canola	cytosol	91.51	91.51
CDX92272	Canola	cytosol	91.51	91.51
CDX92271	Canola	cytosol	76.39	90.85
PGSC0003DMT400076501	Potato	cytosol	46.95	88.5
KXG21030	Sorghum	cytosol	89.12	86.38
Bra037560.1-P	Field mustard	cytoskeleton, cytosol	77.98	83.29
Zm00001d011087_P001	Maize	plastid	98.94	82.16
VIT_04s0044g00580.t01	Wine grape	extracellular	97.08	79.57
PGSC0003DMT400087294	Potato	mitochondrion	56.5	77.74
Os01t0866100-01	Rice	plasma membrane	38.2	70.94
PGSC0003DMT400022210	Potato	cytosol	68.7	70.38
PGSC0003DMT400022205	Potato	cytosol	67.37	69.4
PGSC0003DMT400074882	Potato	cytosol	67.64	68.92
PGSC0003DMT400074887	Potato	cytosol	64.72	65.95
PGSC0003DMT400088088	Potato	cytosol	32.89	63.92
Os03t0783000-01	Rice	cytosol, nucleus	34.48	36.11
Os08t0137200-01	Rice	nucleus	41.64	35.44
Os08t0128300-01	Rice	cytosol	16.71	35.0
Os02t0596900-01	Rice	cytosol	38.2	33.64
Os01t0269900-01	Rice	cytosol	32.89	28.9

Protein Annotations

MapMan:20.2.1	Gene3D:3.30.420.40	Gene3D:3.90.640.10	EntrezGene:4337566	EntrezGene:4349863	ProteinID:AAU44177.1
ProteinID:AAX95098.1	ProteinID:ABA91666.1	ProteinID:ABA91667.1	ProteinID:ABA91668.1	ProteinID:ABG22379.1	ProteinID:ABG22380.1
EMBL:AK060893	EMBL:AK061651	EMBL:AY212324	InterPro:Actin	InterPro:Actin/actin-like_CS	InterPro:Actin_CS
ProteinID:BAF16333.1	ProteinID:BAF27675.1	ProteinID:BAS91878.1	ProteinID:BAT12814.1	ProteinID:EEE51698.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:Os05g0106600	EnsemblPlants:Os05t0106600-01	PFAM:PF00022
PRINTS:PR00190	ScanProsite:PS00406	ScanProsite:PS00432	ScanProsite:PS01132	PANTHER:PTHR11937	PANTHER:PTHR11937:SF252
UniProt:Q65XH8	SMART:SM00268	SUPFAM:SSF53067	UniParc:UPI000043F426	RefSeq:XP_015617195.1	RefSeq:XP_015617196.1
RefSeq:XP_015640005.1	RefSeq:XP_015640006.1	:	:	:	:

Description

Similar to Actin 97. (Os05t0106600-01);Similar to Actin 97. (Os05t0106600-02)

Coordinates

chr5:-:354148..356618

Molecular Weight (calculated)

41698.1 Da

IEP (calculated)

5.057

GRAVY (calculated)

-0.183

Length

377 amino acids

Sequence
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN VPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDS LMKILTERGY
201: SFTTSAEREI VRDIKEKLAY VALDYEQELE TAKNSSSVEK SYELPDGQVI TIGAERFRCP EVLFQPSMIG MEAAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIS KDEYDESGPA IVHRKCF

Best Arabidopsis Sequence Match ( AT5G09810.1 )
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN VPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDS LMKILTERGY
201: MFTTTAEREI VRDIKEKLAY VALDYEQELE TAKSSSSVEK NYELPDGQVI TIGAERFRCP EVLFQPSLIG MEAPGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGSTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIS KSEYDESGPS IVHRKCF

Arabidopsis Description

ACT7AtACT7 [Source:UniProtKB/TrEMBL;Acc:A0A178UEW4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.