Factsheet for Os12t0163700-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 5
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

plastid: 27992503

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P20240_001	Banana	cytosol	79.61	96.33
GSMUA_Achr6P02480_001	Banana	cytosol	78.24	95.62
GSMUA_Achr10P...	Banana	cytosol	85.4	94.22
Os11t0163100-01	Rice	nucleus, plasma membrane, plastid	96.42	92.84
Os05t0106600-01	Rice	nucleus	96.42	92.84
Os01t0964133-01	Rice	plasma membrane	95.87	92.31
Os10t0510000-01	Rice	plastid	95.32	91.78
Os03t0836000-01	Rice	plasma membrane, plastid	95.04	91.51
GSMUA_Achr4P31250_001	Banana	cytosol	94.21	90.72
Os03t0718100-01	Rice	plasma membrane	94.21	90.72
GSMUA_Achr2P15150_001	Banana	cytosol	86.23	89.68
Os05t0438800-01	Rice	plasma membrane, plastid	92.01	88.83
TraesCS3A01G377300.1	Wheat	cytosol	90.91	87.77
HORVU3Hr1G083380.1	Barley	cytosol	87.33	81.28
TraesCS3B01G410000.1	Wheat	cytosol	87.33	78.47
TraesCS3D01G370400.3	Wheat	plastid	87.88	78.0
Os01t0866100-01	Rice	plasma membrane	34.99	62.56
Os08t0137200-01	Rice	nucleus	41.87	34.31
Os03t0783000-01	Rice	cytosol, nucleus	33.61	33.89
Os02t0596900-01	Rice	cytosol	37.47	31.78
Os08t0128300-01	Rice	cytosol	15.15	30.56
Os01t0269900-01	Rice	cytosol	32.51	27.51

Protein Annotations

EnsemblPlants:Os12t0163700-01	EnsemblPlantsGene:Os12g0163700	Gene3D:3.30.420.40	Gene3D:3.90.640.10	InterPro:Actin	InterPro:Actin_CS
PANTHER:PTHR11937	PANTHER:PTHR11937:SF252	PFAM:PF00022	PRINTS:PR00190	ProteinID:BAF29252.1	ProteinID:BAT16014.1
ScanProsite:PS00406	ScanProsite:PS00432	SEG:seg	SMART:SM00268	SUPFAM:SSF53067	UniParc:UPI0000DD9DC9
UniProt:Q0IPW3	MapMan:20.2.1	:	:	:	:

Description

Similar to Actin 7 (Actin 2). (Os12t0163700-01)

Coordinates

chr12:-:3231528..3234554

Molecular Weight (calculated)

39864.8 Da

IEP (calculated)

5.137

GRAVY (calculated)

-0.110

Length

363 amino acids

Sequence
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEKMTQIMFE SFNVPAMYVA IQAVLSLYAS GRTTGIVLDS GDGVSHTVPI YEGYALPHAI LRLDLAGRDL TDALMKILTE RGYSFTTTAE REIVRDIKEK
201: LAYVALDYEQ ELNAAAAAKN SSSVEKSYEL PDGQVITIGA ERFRCPEVLF QPSLVGMEAA GIHETTYNSI MKCDVDIRKD LYGNVVLSGG STMFPGIADR
301: MSKEITALAP SSMKIKVVAP PERKYSVWIG GSILASLSTF QQMWISKAEY DESGPAIVHR KCF

Best Arabidopsis Sequence Match ( AT2G37620.2 )
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF

Arabidopsis Description

ACT1Actin-3 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.