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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, plastid

Predictor Summary:
  • cytosol 5
  • mitochondrion 1
  • cytoskeleton 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane, plastid
Any Predictor:cytoskeleton, cytosol, mitochondrion
BaCelLo:cytosol
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytoskeleton
YLoc:cytosol
 plasma membrane: 27800704
plastid: 27992503
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0125800-01
Os01t0583100-01
Os01t0866100-01
Os01t0964133-01
Os03t0780400-01
Os03t0836000-01
Os05t0106600-01
Os05t0438800-01
Os05t0537400-00
Os05t0592800-02
Os07t0297500-00
Os10t0521100-01
Os11t0163100-01
Os12t0628100-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G49240.1 Os01t0583100-01 AT1G72770.1 19033529
AT1G49240.1 Os05t0537400-00 AT1G72770.1 19033529
AT1G49240.1 Os05t0592800-02 AT1G72770.1 19033529
AT5G09810.1 Os03t0780400-01 AT2G31200.1 21798944
AT5G09810.1 Os07t0297500-00 AT2G31200.1 21798944
AT5G09810.1 Os10t0521100-01 AT2G31200.1 21798944
AT5G09810.1 Os12t0628100-01 AT2G31200.1 21798944
AT5G09810.1 Os01t0125800-01 AT3G18060.1 21798944
AT5G09810.1 Os01t0866100-01 AT5G09810.1 21798944
AT5G09810.1 Os01t0964133-01 AT5G09810.1 21798944
AT5G09810.1 Os03t0836000-01 AT5G09810.1 21798944
AT5G09810.1 Os05t0106600-01 AT5G09810.1 21798944
AT5G09810.1 Os05t0438800-01 AT5G09810.1 21798944
AT5G09810.1 Os11t0163100-01 AT5G09810.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d010159_P002 Maize extracellular, plasma membrane 98.4 98.4
EES19603 Sorghum cytosol 98.14 98.14
HORVU1Hr1G074350.1 Barley cytosol 97.61 97.61
TraesCS1D01G274400.1 Wheat cytosol 97.61 97.61
TraesCS1A01G274400.1 Wheat golgi 97.61 97.61
TraesCS1B01G283900.1 Wheat cytosol 97.61 97.61
CDY40061 Canola cytosol 87.77 93.48
CDX85794 Canola cytosol 87.77 93.48
Os01t0964133-01 Rice plasma membrane 93.62 93.37
KRH59535 Soybean cytosol 93.62 93.37
KRH43389 Soybean cytosol 93.62 93.37
Os11t0163100-01 Rice nucleus, plasma membrane, plastid 93.62 93.37
Bra028615.1-P Field mustard cytosol 93.62 93.37
VIT_12s0178g00200.t01 Wine grape cytosol 93.35 93.1
AT5G09810.1 Thale cress cytosol 93.35 93.1
CDY21607 Canola cytosol 93.35 93.1
CDX69885 Canola cytosol 93.35 93.1
Os03t0836000-01 Rice plasma membrane, plastid 93.35 93.1
CDY30296 Canola cytosol 87.23 92.92
CDY31972 Canola cytosol 87.23 92.92
Solyc01g104770.2.1 Tomato nucleus 93.09 92.84
KRH64098 Soybean cytosol 93.09 92.84
Os05t0106600-01 Rice nucleus 93.09 92.84
GSMUA_Achr9P03170_001 Banana cytosol 92.82 92.82
GSMUA_Achr5P29190_001 Banana cytosol 85.9 92.82
PGSC0003DMT400076499 Potato cytosol 47.61 92.75
Bra009081.1-P Field mustard cytosol 86.97 92.63
GSMUA_Achr6P25350_001 Banana cytosol 92.82 92.57
Os10t0510000-01 Rice plastid 92.82 92.57
GSMUA_Achr10P... Banana cytosol 92.82 92.57
PGSC0003DMT400047481 Potato cytosol 92.82 92.57
CDY56544 Canola cytosol 92.82 92.57
Solyc03g078400.2.1 Tomato nucleus, plastid 92.82 92.57
CDX81140 Canola cytosol 92.82 92.57
KRH53856 Soybean endoplasmic reticulum, mitochondrion 81.65 92.47
Solyc11g005330.1.1 Tomato nucleus 92.55 92.31
Bra006033.1-P Field mustard cytosol 92.55 92.31
GSMUA_Achr2P16160_001 Banana cytosol 92.55 92.31
PGSC0003DMT400010174 Potato cytosol 92.55 92.31
GSMUA_Achr9P08850_001 Banana cytosol 85.64 92.26
GSMUA_Achr8P16150_001 Banana cytosol 92.29 92.04
GSMUA_Achr8P02660_001 Banana cytosol 92.29 92.04
GSMUA_Achr3P02960_001 Banana cytosol 92.29 92.04
Os12t0163700-01 Rice plastid 88.83 92.01
GSMUA_Achr7P10410_001 Banana cytosol 92.02 91.78
GSMUA_Achr11P... Banana cytosol 84.84 91.4
GSMUA_Achr6P34320_001 Banana cytosol 59.31 91.39
KRH10484 Soybean endoplasmic reticulum, mitochondrion, nucleus 91.49 91.25
KRH43946 Soybean endoplasmic reticulum, mitochondrion, nucleus 91.49 91.25
Os03t0718100-01 Rice plasma membrane 91.22 90.98
GSMUA_Achr11P... Banana cytosol 90.69 90.45
CDX82326 Canola cytosol 89.1 88.86
AT1G49240.1 Thale cress cytosol 89.1 88.86
Bra022356.1-P Field mustard cytosol 76.33 88.85
CDX99315 Canola cytosol 76.33 88.85
AT3G18780.3 Thale cress cytosol 88.83 88.59
CDX92272 Canola cytosol 88.83 88.59
CDX95498 Canola cytosol 88.83 88.59
CDY18545 Canola cytosol 88.83 88.59
CDY61982 Canola cytosol 88.83 88.59
Solyc04g071260.2.1 Tomato plastid 88.56 88.33
CDX92271 Canola cytosol 74.2 88.01
PGSC0003DMT400076501 Potato cytosol 44.68 84.0
GSMUA_Achr10P... Banana cytosol 60.37 82.55
Bra037560.1-P Field mustard cytoskeleton, cytosol 76.06 81.02
VIT_04s0044g00580.t01 Wine grape extracellular 93.09 76.09
PGSC0003DMT400087294 Potato mitochondrion 55.05 75.55
Os01t0866100-01 Rice plasma membrane 38.56 71.43
PGSC0003DMT400022210 Potato cytosol 65.96 67.39
PGSC0003DMT400022205 Potato cytosol 65.43 67.21
PGSC0003DMT400074882 Potato cytosol 65.96 67.03
PGSC0003DMT400074887 Potato cytosol 62.77 63.78
PGSC0003DMT400088088 Potato cytosol 32.45 62.89
Os08t0137200-01 Rice nucleus 40.96 34.76
Os03t0783000-01 Rice cytosol, nucleus 33.24 34.72
Os08t0128300-01 Rice cytosol 15.96 33.33
Os02t0596900-01 Rice cytosol 37.77 33.18
Os01t0269900-01 Rice cytosol 33.51 29.37
Protein Annotations
MapMan:20.2.1Gene3D:3.30.420.40Gene3D:3.90.640.10EntrezGene:4338914ProteinID:AAT07616.1EMBL:AK071586
InterPro:ActinInterPro:Actin/actin-like_CSInterPro:Actin_CSProteinID:BAF17575.1ProteinID:BAS94224.1ProteinID:EEE63860.1
GO:GO:0000166GO:GO:0003674GO:GO:0005488GO:GO:0005524EMBL:KC140129EnsemblPlantsGene:Os05g0438800
EnsemblPlants:Os05t0438800-01PFAM:PF00022PRINTS:PR00190ScanProsite:PS00406ScanProsite:PS00432ScanProsite:PS01132
PANTHER:PTHR11937PANTHER:PTHR11937:SF248UniProt:Q75HX0SMART:SM00268SUPFAM:SSF53067UniParc:UPI000035E02A
RefSeq:XP_015639713.1SEG:seg::::
Description
Similar to Actin 1. (Os05t0438800-01)
Coordinates
chr5:-:21500616..21504228
Molecular Weight (calculated)
41610.0 Da
IEP (calculated)
5.154
GRAVY (calculated)
-0.202
Length
376 amino acids
Sequence
(BLAST)
001: MADEDIQPIV CDNGTGMVKA GFAGDDAPRA VFPSIVGRPR HTGVMVGMGQ KDAYVGDEAQ AKRGILTLKY PIEHGIVNNW DDMEKIWHHT FYNELRVAPE
101: DHPVLLTEAP LNPKANREKM TQIMFETFNC PAMYVAIQAV LSLYASGRTT GIVLDSGDGV SHTVPIYEGY TLPHAILRLD LAGRDLTDHL MKILTERGYS
201: LTTSAEREIV RDIKEKLAYV ALDYEQELET SRSSSSVEKS YEMPDGQVIT IGSERFRCPE VLFQPSLVGM ESPGIHEATY NSIMKCDVDI RKDLYGNVVL
301: SGGSTMFPGI ADRMSKEITS LAPSSMKVKV IAPPERKYSV WIGGSILASL STFQQMWISK GEYDESGPGI VHMKCF
Best Arabidopsis Sequence Match ( AT3G12110.1 )
(BLAST)
001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN TPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDY LMKILTERGY
201: SFTTSAEREI VRDVKEKLAY IALDYEQEME TANTSSSVEK SYELPDGQVI TIGGERFRCP EVLFQPSLVG MEAAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF
Arabidopsis Description
ACT11Actin-11 [Source:UniProtKB/Swiss-Prot;Acc:P53496]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.