Factsheet for Solyc04g071260.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P16160_001	Banana	cytosol	92.84	92.84
GSMUA_Achr5P29190_001	Banana	cytosol	85.68	92.82
GSMUA_Achr10P...	Banana	cytosol	92.57	92.57
Os05t0106600-01	Rice	nucleus	92.57	92.57
GSMUA_Achr9P03170_001	Banana	cytosol	92.31	92.55
Os03t0836000-01	Rice	plasma membrane, plastid	92.31	92.31
TraesCS5B01G124100.1	Wheat	cytosol	92.31	92.31
KXG21029	Sorghum	cytosol	92.31	92.31
TraesCS1D01G020000.1	Wheat	cytosol	92.31	92.31
GSMUA_Achr7P10410_001	Banana	cytosol	92.31	92.31
TraesCS1B01G024500.1	Wheat	golgi, nucleus	92.31	92.31
Zm00001d011086_P005	Maize	cytosol	92.31	92.31
Os11t0163100-01	Rice	nucleus, plasma membrane, plastid	92.31	92.31
Zm00001d035720_P002	Maize	cytosol	92.31	92.31
EES08028	Sorghum	cytosol	92.31	92.31
TraesCS5B01G516100.1	Wheat	cytosol	92.04	92.04
Os01t0964133-01	Rice	plasma membrane	92.04	92.04
KXG23031	Sorghum	cytosol	92.04	92.04
Solyc04g011500.2.1	Tomato	extracellular, nucleus, plastid, unclear	92.04	92.04
HORVU5Hr1G117900.1	Barley	cytosol	92.04	92.04
EER90564	Sorghum	cytosol	92.04	92.04
TraesCS5D01G516200.1	Wheat	cytosol	92.04	92.04
Zm00001d053177_P004	Maize	cytosol	92.04	92.04
GSMUA_Achr8P16150_001	Banana	cytosol	92.04	92.04
GSMUA_Achr9P08850_001	Banana	cytosol	85.15	91.98
GSMUA_Achr8P02660_001	Banana	cytosol	91.78	91.78
GSMUA_Achr6P25350_001	Banana	cytosol	91.78	91.78
TraesCS4A01G356100.2	Wheat	cytosol	92.04	91.56
GSMUA_Achr3P02960_001	Banana	cytosol	91.51	91.51
GSMUA_Achr6P34320_001	Banana	cytosol	59.15	91.39
Zm00001d019635_P001	Maize	cytosol	33.42	91.3
Solyc01g104770.2.1	Tomato	nucleus	91.25	91.25
Solyc03g078400.2.1	Tomato	nucleus, plastid	91.25	91.25
Solyc10g080500.1.1	Tomato	extracellular, nucleus, plastid, unclear	91.25	91.25
GSMUA_Achr11P...	Banana	cytosol	84.35	91.12
Solyc11g065990.1.1	Tomato	nucleus, plastid, unclear	90.98	90.98
Solyc11g005330.1.1	Tomato	nucleus	90.98	90.98
Solyc05g054480.2.1	Tomato	extracellular, nucleus, plastid, unclear	90.98	90.98
Solyc06g076090.2.1	Tomato	unclear	90.72	90.72
GSMUA_Achr11P...	Banana	cytosol	90.72	90.72
EES01810	Sorghum	cytosol	90.19	90.43
Zm00001d012277_P001	Maize	cytosol	90.19	90.43
Zm00001d035722_P007	Maize	plasma membrane	92.31	90.39
Zm00001d042731_P002	Maize	extracellular, plasma membrane, plastid	89.39	89.63
Solyc10g086460.1.1	Tomato	unclear	88.86	88.86
TraesCS5D01G132200.1	Wheat	golgi	87.27	88.68
Os05t0438800-01	Rice	plasma membrane, plastid	88.33	88.56
Zm00001d034761_P002	Maize	cytosol	92.04	88.52
TraesCS1A01G274400.1	Wheat	golgi	88.06	88.3
TraesCS1B01G283900.1	Wheat	cytosol	88.06	88.3
TraesCS1D01G274400.1	Wheat	cytosol	88.06	88.3
HORVU1Hr1G074350.1	Barley	cytosol	88.06	88.3
EES19603	Sorghum	cytosol	87.8	88.03
Zm00001d016605_P001	Maize	cytosol	36.6	87.34
Zm00001d010159_P002	Maize	extracellular, plasma membrane	87.0	87.23
HORVU1Hr1G002840.6	Barley	plasma membrane	92.31	85.5
TraesCS1A01G020500.2	Wheat	cytosol	92.31	85.5
TraesCS5A01G124300.2	Wheat	golgi	92.31	85.09
GSMUA_Achr10P...	Banana	cytosol	61.27	84.0
Solyc09g010750.1.1	Tomato	cytosol	39.52	83.24
Zm00001d016508_P001	Maize	cytosol	30.24	82.61
Zm00001d008746_P001	Maize	cytosol	59.15	81.09
KXG21030	Sorghum	cytosol	82.76	80.21
Zm00001d019396_P001	Maize	cytosol	35.54	79.76
GSMUA_Achr2P08030_001	Banana	cytosol	73.47	79.14
Zm00001d011087_P001	Maize	plastid	92.31	76.65
Zm00001d007792_P001	Maize	cytosol	53.05	75.76
Zm00001d003298_P001	Maize	cytosol	51.19	73.38
HORVU5Hr1G039850.3	Barley	mitochondrion	88.06	71.4
Zm00001d004087_P001	Maize	cytosol	39.26	68.52
Os01t0866100-01	Rice	plasma membrane	35.81	66.5
Zm00001d004855_P002	Maize	cytoskeleton, cytosol, nucleus	91.25	58.31
Solyc02g094320.2.1	Tomato	cytosol	45.62	44.22
Solyc11g008500.1.1	Tomato	cytosol, nucleus	37.93	39.72
Solyc12g037980.1.1	Tomato	nucleus	43.24	37.47
Solyc04g024530.2.1	Tomato	cytosol	40.58	35.66
Solyc05g013940.2.1	Tomato	cytosol	40.58	35.66
Zm00001d034421_P004	Maize	plastid	43.77	35.26
Solyc05g018600.2.1	Tomato	cytosol	33.16	28.54

Protein Annotations

MapMan:20.2.1	Gene3D:3.30.420.40	Gene3D:3.90.640.10	InterPro:Actin	InterPro:Actin/actin-like_CS	InterPro:Actin_CS
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	UniProt:K4BTB8	PFAM:PF00022	PRINTS:PR00190
ScanProsite:PS00406	ScanProsite:PS00432	ScanProsite:PS01132	PANTHER:PTHR11937	PANTHER:PTHR11937:SF361	SMART:SM00268
SUPFAM:SSF53067	EnsemblPlantsGene:Solyc04g071260.2	EnsemblPlants:Solyc04g071260.2.1	UniParc:UPI0002766838	:	:

Description

No Description!

Coordinates

chr4:-:58195889..58197422

Molecular Weight (calculated)

41921.4 Da

IEP (calculated)

5.057

GRAVY (calculated)

-0.164

Length

377 amino acids

Sequence
(BLAST)

001: MADGEDIQPL VVDNGTGMVK AGFAGDDAPR AVFPSIVGRP RYTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIRHGIVDN WDDMEKIWHH NFYNELRVAP
101: EEHSILLTEA PLNPKANREK MTQIMFETFN VPAMYIAIQA VLSLYASGRT TGIVLDSGDG VTHTVPIYEG YALPHAILRL DLAGRDLTDY LMMILTERGY
201: SFTTAAEREI VRDVKEKLAY VALDYEQELE TTKNGKDVEK SYELPDGQIV TIGAERFRCP EVLFQPSLIG MEAVGIHETT YSSIMKCDVD IRRDLYGNVV
301: LSGGSTMFPG ITDRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIT KAEYDESGPA IVHRKCF

Best Arabidopsis Sequence Match ( AT2G37620.2 )
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF

Arabidopsis Description

ACT1Actin-3 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.