Factsheet for Solyc06g076090.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

cytosol 5
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400077954	Potato	cytosol	99.2	99.2
Solyc10g080500.1.1	Tomato	extracellular, nucleus, plastid, unclear	97.88	97.88
Solyc04g011500.2.1	Tomato	extracellular, nucleus, plastid, unclear	97.88	97.88
Solyc11g065990.1.1	Tomato	nucleus, plastid, unclear	97.61	97.61
Solyc05g054480.2.1	Tomato	extracellular, nucleus, plastid, unclear	97.61	97.61
KRH01660	Soybean	mitochondrion, nucleus	96.82	96.82
VIT_13s0019g01240.t01	Wine grape	cytosol	96.82	96.82
KRH70465	Soybean	mitochondrion, nucleus	96.82	96.82
KRH56507	Soybean	endoplasmic reticulum, mitochondrion	96.02	96.02
KRG93168	Soybean	mitochondrion, nucleus	95.76	95.76
Solyc03g078400.2.1	Tomato	nucleus, plastid	95.23	95.23
Solyc11g005330.1.1	Tomato	nucleus	94.96	94.96
Solyc01g104770.2.1	Tomato	nucleus	94.43	94.43
Solyc10g086460.1.1	Tomato	unclear	94.16	94.16
Solyc04g071260.2.1	Tomato	plastid	90.72	90.72
Solyc09g010750.1.1	Tomato	cytosol	40.32	84.92
Solyc02g094320.2.1	Tomato	cytosol	44.3	42.93
Solyc11g008500.1.1	Tomato	cytosol, nucleus	38.46	40.28
Solyc12g037980.1.1	Tomato	nucleus	43.5	37.7
Solyc05g013940.2.1	Tomato	cytosol	39.79	34.97
Solyc04g024530.2.1	Tomato	cytosol	39.26	34.5
Solyc05g018600.2.1	Tomato	cytosol	31.83	27.4

Protein Annotations

EnsemblPlants:Solyc06g076090.2.1	EnsemblPlantsGene:Solyc06g076090.2	Gene3D:3.30.420.40	Gene3D:3.90.640.10	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:Actin	InterPro:Actin/actin-like_CS	InterPro:Actin_CS	PANTHER:PTHR11937
PANTHER:PTHR11937:SF276	PFAM:PF00022	PRINTS:PR00190	ScanProsite:PS00406	ScanProsite:PS00432	ScanProsite:PS01132
SMART:SM00268	SUPFAM:SSF53067	UniParc:UPI0002766F29	UniProt:K4C9X0	MapMan:20.2.1	:

Description

No Description!

Coordinates

chr6:+:47239341..47241839

Molecular Weight (calculated)

41760.1 Da

IEP (calculated)

5.154

GRAVY (calculated)

-0.203

Length

377 amino acids

Sequence
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN TPAMYVAIQA VLSLYASGRT TGIVMDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDH LMKILTERGY
201: SFTTTAEREI VRDVKEKLSY IALDYEQELD TSNTNSSVEK SYELPDGQVI TIGAERFRCP EVLFQPSMIG MEAAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFTG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF

Best Arabidopsis Sequence Match ( AT3G12110.1 )
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN TPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDY LMKILTERGY
201: SFTTSAEREI VRDVKEKLAY IALDYEQEME TANTSSSVEK SYELPDGQVI TIGGERFRCP EVLFQPSLVG MEAAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF

Arabidopsis Description

ACT11Actin-11 [Source:UniProtKB/Swiss-Prot;Acc:P53496]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.