Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400056033 | Potato | cytosol | 98.85 | 98.85 |
| KRH66446 | Soybean | nucleus | 86.9 | 84.94 |
| KRH48882 | Soybean | nucleus | 85.98 | 83.86 |
| KRH41617 | Soybean | nucleus | 81.38 | 82.13 |
| CDX96721 | Canola | cytosol | 78.39 | 77.85 |
| CDX83847 | Canola | cytosol | 78.16 | 77.45 |
| CDY26159 | Canola | cytosol | 78.39 | 77.15 |
| AT1G18450.1 | Thale cress | cytosol | 78.16 | 77.1 |
| CDY19213 | Canola | cytosol | 78.16 | 76.92 |
| GSMUA_Achr8P16860_001 | Banana | endoplasmic reticulum | 80.23 | 73.78 |
| EER93001 | Sorghum | cytosol | 74.71 | 73.36 |
| Os08t0137200-01 | Rice | nucleus | 74.25 | 72.91 |
| Zm00001d027326_P001 | Maize | cytosol, extracellular, nucleus | 74.02 | 72.69 |
| TraesCS5D01G364800.1 | Wheat | cytosol | 73.33 | 72.01 |
| TraesCS5B01G358500.1 | Wheat | cytosol | 73.33 | 72.01 |
| TraesCS5A01G356000.1 | Wheat | cytosol, nucleus | 73.1 | 71.78 |
| TraesCS6B01G189000.1 | Wheat | cytosol | 72.18 | 70.88 |
| TraesCS6D01G149800.1 | Wheat | cytosol | 71.49 | 70.2 |
| TraesCS6A01G162300.2 | Wheat | cytosol | 71.26 | 69.98 |
| HORVU6Hr1G032610.8 | Barley | cytosol | 72.18 | 65.28 |
| VIT_17s0000g04010.t01 | Wine grape | mitochondrion | 64.83 | 63.8 |
| HORVU5Hr1G088030.1 | Barley | plastid | 73.33 | 62.8 |
| Solyc01g104770.2.1 | Tomato | nucleus | 38.39 | 44.3 |
| Solyc05g054480.2.1 | Tomato | extracellular, nucleus, plastid, unclear | 38.16 | 44.03 |
| Solyc10g080500.1.1 | Tomato | extracellular, nucleus, plastid, unclear | 37.93 | 43.77 |
| Solyc11g065990.1.1 | Tomato | nucleus, plastid, unclear | 37.93 | 43.77 |
| Solyc06g076090.2.1 | Tomato | unclear | 37.7 | 43.5 |
| Solyc04g011500.2.1 | Tomato | extracellular, nucleus, plastid, unclear | 37.7 | 43.5 |
| Solyc11g005330.1.1 | Tomato | nucleus | 37.47 | 43.24 |
| Solyc04g071260.2.1 | Tomato | plastid | 37.47 | 43.24 |
| Solyc03g078400.2.1 | Tomato | nucleus, plastid | 37.47 | 43.24 |
| Solyc10g086460.1.1 | Tomato | unclear | 36.55 | 42.18 |
| Solyc09g010750.1.1 | Tomato | cytosol | 15.17 | 36.87 |
| Solyc02g094320.2.1 | Tomato | cytosol | 28.74 | 32.13 |
| Solyc05g013940.2.1 | Tomato | cytosol | 28.05 | 28.44 |
| Solyc11g008500.1.1 | Tomato | cytosol, nucleus | 23.45 | 28.33 |
| Solyc04g024530.2.1 | Tomato | cytosol | 27.82 | 28.21 |
| Solyc05g018600.2.1 | Tomato | cytosol | 23.68 | 23.52 |
Protein Annotations
| EnsemblPlants:Solyc12g037980.1.1 | EnsemblPlantsGene:Solyc12g037980.1 | Gene3D:3.30.420.40 | Gene3D:3.90.640.10 | InterPro:Actin | PANTHER:PTHR11937 |
| PANTHER:PTHR11937:SF274 | PFAM:PF00022 | PRINTS:PR00190 | SEG:seg | SMART:SM00268 | SUPFAM:SSF53067 |
| UniParc:UPI000276A330 | UniProt:K4DEF3 | MapMan:12.4.6.1 | : | : | : |
Description
No Description!
Coordinates
chr12:-:49582156..49599543
Molecular Weight (calculated)
47771.7 Da
IEP (calculated)
4.722
GRAVY (calculated)
-0.275
Length
435 amino acids
Sequence
(BLAST)
(BLAST)
001: MYGGDEVSAI VIDLGSHTCK AGYAGEDAPK AVFPSAVGSV DEMEVDNPDN PEDNSGSAPD LKSKGKRKLY VGSQALGFRR DHMEVISPIR DGMVVDWDIV
101: ENIWDHAFRE CLLIDPKEHP MLLAEPCSNT QQQREKAAEI MFEKYQVPAL FLAKNAVLTS FASGRATSLV VDSGGGLTTV APVHDGYVLQ KAVCTSPIGG
201: GILTDCLIKS LEQKGITIKP RYSFKRKEIR PGEFQTVDLD FPDTTESYKL YCQRAIASDI KECVSRAPDT PYDDSSYSNI PTTSYELPDG QIIEVGADRF
301: KIPDIIFNPS LVQTIPGMES FAETAASLRG LPQMVIDSIN KCDVDIRREL FSSILLAGGT ASMQQLKERL EKDLLEESPQ AARVKVLASG NATERRFSVW
401: IGGSILASLG SFQQMWFSKS EYEEHGASYV QRKCP
101: ENIWDHAFRE CLLIDPKEHP MLLAEPCSNT QQQREKAAEI MFEKYQVPAL FLAKNAVLTS FASGRATSLV VDSGGGLTTV APVHDGYVLQ KAVCTSPIGG
201: GILTDCLIKS LEQKGITIKP RYSFKRKEIR PGEFQTVDLD FPDTTESYKL YCQRAIASDI KECVSRAPDT PYDDSSYSNI PTTSYELPDG QIIEVGADRF
301: KIPDIIFNPS LVQTIPGMES FAETAASLRG LPQMVIDSIN KCDVDIRREL FSSILLAGGT ASMQQLKERL EKDLLEESPQ AARVKVLASG NATERRFSVW
401: IGGSILASLG SFQQMWFSKS EYEEHGASYV QRKCP
001: MYGGDEVSAI VVDLGSHTCK AGYAGEDAPK AVFPSVIGAV DGVEAMDVDV DSTKTNSNSE DSKTESEKEK SKRKLYVGSQ AMSYRRDHME VLSPIKDGIV
101: SDWDLVDNIW EHAFKSCLMI DPTEHPMLLA EPPLNTQQQR EKAAELMFEK YKVPALFMAK NPVLTSFATG RATSLVVDCG GGSTTISPVH DGYVLQKAVV
201: SSPLGGEFLT DCLLKSLESK GIKIRPRYSF KRKEVRAGEF QVEDVDIPDT TESYKLFCQR MIVGDIKDSI CRVPDTPYDD KSYSNIPTTS YELPDGQTLE
301: IGADRFKVPD VMFNPSIVQT IPGMEKYAEM IPSVRGLPHM VMESINKCDV DIRRELYSSI LLAGGTSSMQ QLKERLEKDL IEESPHSARV KVLASGNTTE
401: RRFSVWIGGS ILASLGSFQQ MWFSKSEYEE HGASYIQRKC P
101: SDWDLVDNIW EHAFKSCLMI DPTEHPMLLA EPPLNTQQQR EKAAELMFEK YKVPALFMAK NPVLTSFATG RATSLVVDCG GGSTTISPVH DGYVLQKAVV
201: SSPLGGEFLT DCLLKSLESK GIKIRPRYSF KRKEVRAGEF QVEDVDIPDT TESYKLFCQR MIVGDIKDSI CRVPDTPYDD KSYSNIPTTS YELPDGQTLE
301: IGADRFKVPD VMFNPSIVQT IPGMEKYAEM IPSVRGLPHM VMESINKCDV DIRRELYSSI LLAGGTSSMQ QLKERLEKDL IEESPHSARV KVLASGNTTE
401: RRFSVWIGGS ILASLGSFQQ MWFSKSEYEE HGASYIQRKC P
Arabidopsis Description
ARP4Actin-related protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q84M92]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.