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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX83847 Canola cytosol 98.4 98.18
CDY26159 Canola cytosol 96.58 95.7
CDY19213 Canola cytosol 96.58 95.7
AT1G18450.1 Thale cress cytosol 95.21 94.56
PGSC0003DMT400056033 Potato cytosol 78.31 78.85
Solyc12g037980.1.1 Tomato nucleus 77.85 78.39
KRH66446 Soybean nucleus 79.0 77.75
KRH48882 Soybean nucleus 78.31 76.91
KRH41617 Soybean nucleus 73.52 74.71
Os08t0137200-01 Rice nucleus 70.32 69.53
EER93001 Sorghum cytosol 69.41 68.62
GSMUA_Achr8P16860_001 Banana endoplasmic reticulum 73.74 68.29
TraesCS5B01G358500.1 Wheat cytosol 68.95 68.17
TraesCS5D01G364800.1 Wheat cytosol 68.95 68.17
TraesCS5A01G356000.1 Wheat cytosol, nucleus 68.72 67.95
Zm00001d027326_P001 Maize cytosol, extracellular, nucleus 68.49 67.72
TraesCS6B01G189000.1 Wheat cytosol 68.26 67.49
TraesCS6D01G149800.1 Wheat cytosol 67.58 66.82
TraesCS6A01G162300.2 Wheat cytosol 67.35 66.59
HORVU6Hr1G032610.8 Barley cytosol 68.49 62.37
VIT_17s0000g04010.t01 Wine grape mitochondrion 59.59 59.05
HORVU5Hr1G088030.1 Barley plastid 68.26 58.86
CDY40061 Canola cytosol 36.3 45.04
CDX85794 Canola cytosol 36.3 45.04
CDY31972 Canola cytosol 36.07 44.76
CDY30296 Canola cytosol 36.07 44.76
CDX73527 Canola cytosol 35.16 43.63
CDX81140 Canola cytosol 37.44 43.5
CDX87810 Canola cytosol 37.44 43.5
CDY56544 Canola cytosol 37.44 43.5
CDY21607 Canola cytosol 37.21 43.24
CDX69885 Canola cytosol 37.21 43.24
CDX99315 Canola cytosol 31.74 43.03
CDY48688 Canola cytosol 33.33 42.94
CDX82326 Canola cytosol 36.76 42.71
CDY61982 Canola cytosol 36.76 42.71
CDY18545 Canola cytosol 36.76 42.71
CDX92272 Canola cytosol 36.76 42.71
CDY08455 Canola cytosol 36.76 42.71
CDY01102 Canola cytosol 36.76 42.71
CDX95498 Canola cytosol 36.76 42.71
CDY65255 Canola cytosol 31.96 42.3
CDX93360 Canola cytosol 31.96 42.3
CDX78202 Canola cytosol 36.3 42.18
CDY38066 Canola cytosol 36.3 42.18
CDX71119 Canola cytosol 36.3 42.18
CDY53444 Canola cytosol 36.3 42.18
CDY30846 Canola cytosol 36.3 42.18
CDY21777 Canola cytosol 36.3 42.18
CDX76191 Canola cytosol 36.3 42.18
CDX99111 Canola cytosol 36.3 42.18
CDX88698 Canola cytosol 36.3 42.18
CDX86081 Canola cytosol 36.3 42.18
CDX82985 Canola cytosol 36.3 42.18
CDX74944 Canola cytosol 35.84 41.64
CDX91373 Canola cytosol 35.84 41.64
CDY07779 Canola cytosol 33.1 41.19
CDX92271 Canola cytosol 29.45 40.69
CDX94448 Canola cytosol 35.16 39.79
CDX79746 Canola cytosol 33.1 38.98
CDY06885 Canola cytosol 28.31 37.46
CDY14813 Canola cytosol 29.68 37.04
CDX67573 Canola cytosol 23.06 33.22
CDY71336 Canola cytosol 20.55 32.73
CDY00172 Canola cytosol 26.71 30.08
CDY20066 Canola cytosol 26.71 30.08
CDY52404 Canola cytosol 26.71 29.62
CDY13674 Canola cytosol 26.71 29.62
CDY21087 Canola cytosol 28.08 28.81
CDY34585 Canola cytosol 27.85 28.57
CDX67843 Canola cytosol 23.29 28.33
CDX98005 Canola cytosol 27.4 28.1
CDY56730 Canola cytosol 23.06 28.06
CDY19392 Canola cytosol 27.17 27.87
CDY62715 Canola cytosol 22.6 27.27
CDX71774 Canola cytosol 21.69 26.61
CDY42404 Canola cytosol 24.89 25.53
CDY52344 Canola cytosol 22.83 24.81
CDY33033 Canola nucleus 30.37 24.58
CDX80274 Canola nucleus 30.59 24.41
Protein Annotations
EnsemblPlants:CDX96721EnsemblPlantsGene:GSBRNA2T00102936001Gene3D:3.30.420.40Gene3D:3.90.640.10GO:A0A078E630InterPro:Actin
PANTHER:PTHR11937PANTHER:PTHR11937:SF274PFAM:PF00022PRINTS:PR00190ProteinID:CDX96721ProteinID:CDX96721.1
SMART:SM00268SUPFAM:SSF53067UniParc:UPI0004EE01D5MapMan:12.4.6.1::
Description
BnaA08g22640D
Coordinates
chrLK031895:-:716741..720479
Molecular Weight (calculated)
48563.1 Da
IEP (calculated)
5.256
GRAVY (calculated)
-0.341
Length
438 amino acids
Sequence
(BLAST)
001: MYGGDEVSAI VVDLGSHTCK AGYAGEDAPK AVFPSVVGAV DGVEAMEVDV DSAKTNSNSE DKSEKDKGKR KLCVGSQALN YRRDHMEILS PIKDGIVSDW
101: DLVDNIWEHA FRSCLMIDPK EHPMLLAEPP LNTQQQREKA AELMFEKYKV PALFMAKNPV LTSFATGRAT SLVVDCGGGS TTISPVHEGY VLQKAVVSNP
201: IGGEFLTDCL LKSLESKGIK IRPRYCFKRK EVRPGEFQVE DVGLPDTTES YKLFCQRMIV GDIKDSICRV PDTPYDDKSY SNIPTTSYEL PDGQTLEIGA
301: DKFKIPDVMF NPSIVQTIPG MEKYADMIPS VRGLPHMVME SINKCDVDIR RELYSSILLA GGTSSMQQLK ERLEKDLIEE SPHSARVKVL ASGNTTERRF
401: SVWIGGSILA SLGSFQQMWF SKSEYEEHGA SYIQRKCP
Best Arabidopsis Sequence Match ( AT1G18450.1 )
(BLAST)
001: MYGGDEVSAI VVDLGSHTCK AGYAGEDAPK AVFPSVIGAV DGVEAMDVDV DSTKTNSNSE DSKTESEKEK SKRKLYVGSQ AMSYRRDHME VLSPIKDGIV
101: SDWDLVDNIW EHAFKSCLMI DPTEHPMLLA EPPLNTQQQR EKAAELMFEK YKVPALFMAK NPVLTSFATG RATSLVVDCG GGSTTISPVH DGYVLQKAVV
201: SSPLGGEFLT DCLLKSLESK GIKIRPRYSF KRKEVRAGEF QVEDVDIPDT TESYKLFCQR MIVGDIKDSI CRVPDTPYDD KSYSNIPTTS YELPDGQTLE
301: IGADRFKVPD VMFNPSIVQT IPGMEKYAEM IPSVRGLPHM VMESINKCDV DIRRELYSSI LLAGGTSSMQ QLKERLEKDL IEESPHSARV KVLASGNTTE
401: RRFSVWIGGS ILASLGSFQQ MWFSKSEYEE HGASYIQRKC P
Arabidopsis Description
ARP4Actin-related protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q84M92]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.