Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX93360 | Canola | cytosol | 99.09 | 99.09 |
| CDX73527 | Canola | cytosol | 99.09 | 92.92 |
| CDY07779 | Canola | cytosol | 96.68 | 90.91 |
| CDX85794 | Canola | cytosol | 94.56 | 88.67 |
| CDY40061 | Canola | cytosol | 94.56 | 88.67 |
| CDY30296 | Canola | cytosol | 94.56 | 88.67 |
| CDY31972 | Canola | cytosol | 94.56 | 88.67 |
| Bra017166.1-P | Field mustard | cytosol | 99.7 | 87.53 |
| CDX74944 | Canola | cytosol | 99.09 | 87.0 |
| CDX78202 | Canola | cytosol | 99.09 | 87.0 |
| CDX91373 | Canola | cytosol | 99.09 | 87.0 |
| CDX76191 | Canola | cytosol | 98.79 | 86.74 |
| AT2G37620.1 | Thale cress | cytosol | 98.49 | 86.47 |
| CDY30846 | Canola | cytosol | 98.19 | 86.21 |
| CDX79746 | Canola | cytosol | 96.68 | 86.02 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 96.98 | 85.15 |
| CDX82985 | Canola | cytosol | 96.37 | 84.62 |
| KRH38098 | Soybean | cytosol | 96.37 | 84.62 |
| CDY48688 | Canola | cytosol | 86.71 | 84.41 |
| CDX86081 | Canola | cytosol | 96.07 | 84.35 |
| CDX88698 | Canola | cytosol | 96.07 | 84.35 |
| CDY53444 | Canola | cytosol | 96.07 | 84.35 |
| CDX71119 | Canola | cytosol | 96.07 | 84.35 |
| KRH71847 | Soybean | endoplasmic reticulum, nucleus | 96.07 | 84.35 |
| CDY21777 | Canola | cytosol | 96.07 | 84.35 |
| CDX99111 | Canola | cytosol | 96.07 | 84.35 |
| CDY38066 | Canola | cytosol | 95.77 | 84.08 |
| VIT_06s0004g04570.t01 | Wine grape | cytosol | 95.47 | 84.04 |
| VIT_13s0019g01240.t01 | Wine grape | cytosol | 95.47 | 83.82 |
| KRH10268 | Soybean | mitochondrion, nucleus | 95.47 | 83.82 |
| KRH56507 | Soybean | endoplasmic reticulum, mitochondrion | 95.17 | 83.55 |
| KRH67068 | Soybean | endoplasmic reticulum, mitochondrion, nucleus | 95.17 | 83.55 |
| KRG95386 | Soybean | cytosol | 95.17 | 83.55 |
| KRH01660 | Soybean | mitochondrion, nucleus | 94.86 | 83.29 |
| KRH70465 | Soybean | mitochondrion, nucleus | 94.86 | 83.29 |
| KRH23061 | Soybean | endoplasmic reticulum, mitochondrion, nucleus | 94.86 | 83.29 |
| KRG93168 | Soybean | mitochondrion, nucleus | 94.86 | 83.29 |
| KRH29804 | Soybean | endoplasmic reticulum, mitochondrion, nucleus | 94.86 | 83.29 |
| VIT_08s0007g06520.t01 | Wine grape | cytosol | 94.86 | 83.29 |
| CDX69885 | Canola | cytosol | 94.56 | 83.02 |
| CDY21607 | Canola | cytosol | 94.56 | 83.02 |
| CDY01102 | Canola | cytosol | 94.56 | 83.02 |
| CDY08455 | Canola | cytosol | 94.26 | 82.76 |
| CDX94448 | Canola | cytosol | 96.68 | 82.69 |
| CDY56544 | Canola | cytosol | 93.96 | 82.49 |
| CDX81140 | Canola | cytosol | 93.96 | 82.49 |
| PGSC0003DMT400023026 | Potato | cytosol | 93.35 | 81.96 |
| PGSC0003DMT400049429 | Potato | cytosol | 92.14 | 80.9 |
| Solyc10g086460.1.1 | Tomato | unclear | 92.14 | 80.9 |
| CDX87810 | Canola | cytosol | 90.94 | 79.84 |
| GSMUA_Achr10P... | Banana | cytosol | 63.14 | 79.47 |
| GSMUA_Achr7P18630_001 | Banana | cytosol | 75.83 | 78.44 |
| CDX92272 | Canola | cytosol | 88.82 | 77.98 |
| CDX95498 | Canola | cytosol | 88.82 | 77.98 |
| CDY18545 | Canola | cytosol | 88.82 | 77.98 |
| CDY61982 | Canola | cytosol | 88.82 | 77.98 |
| CDX82326 | Canola | cytosol | 88.52 | 77.72 |
| CDX99315 | Canola | cytosol | 74.62 | 76.47 |
| CDX92271 | Canola | cytosol | 71.6 | 74.76 |
| Solyc09g010750.1.1 | Tomato | cytosol | 40.18 | 74.3 |
| KRH24799 | Soybean | cytosol | 90.03 | 72.68 |
| CDY71336 | Canola | cytosol | 58.31 | 70.18 |
| CDY06885 | Canola | cytosol | 65.86 | 65.86 |
| CDX67573 | Canola | cytosol | 59.82 | 65.13 |
| CDY14813 | Canola | cytosol | 68.88 | 64.96 |
| CDY33033 | Canola | nucleus | 77.64 | 47.5 |
| CDX80274 | Canola | nucleus | 76.44 | 46.08 |
| CDY00172 | Canola | cytosol | 45.92 | 39.07 |
| CDY20066 | Canola | cytosol | 45.92 | 39.07 |
| CDY52404 | Canola | cytosol | 46.22 | 38.73 |
| CDY13674 | Canola | cytosol | 46.22 | 38.73 |
| CDY56730 | Canola | cytosol | 40.18 | 36.94 |
| CDX67843 | Canola | cytosol | 40.18 | 36.94 |
| CDY62715 | Canola | cytosol | 39.88 | 36.36 |
| CDX71774 | Canola | cytosol | 38.97 | 36.13 |
| CDY52344 | Canola | cytosol | 40.18 | 33.0 |
| CDX83847 | Canola | cytosol | 42.6 | 32.12 |
| CDX96721 | Canola | cytosol | 42.3 | 31.96 |
| CDY26159 | Canola | cytosol | 42.6 | 31.9 |
| CDY19213 | Canola | cytosol | 42.6 | 31.9 |
| CDY21087 | Canola | cytosol | 37.76 | 29.27 |
| CDY34585 | Canola | cytosol | 37.46 | 29.04 |
| CDX98005 | Canola | cytosol | 37.16 | 28.81 |
| CDY19392 | Canola | cytosol | 36.86 | 28.57 |
| CDY42404 | Canola | cytosol | 33.53 | 26.0 |
Protein Annotations
| MapMan:20.2.1 | Gene3D:3.30.420.40 | Gene3D:3.90.640.10 | GO:A0A078JFN4 | UniProt:A0A078JFN4 | InterPro:Actin |
| InterPro:Actin/actin-like_CS | InterPro:Actin_CS | EnsemblPlants:CDY65255 | ProteinID:CDY65255 | ProteinID:CDY65255.1 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | EnsemblPlantsGene:GSBRNA2T00045475001 | PFAM:PF00022 | PRINTS:PR00190 |
| ScanProsite:PS00432 | ScanProsite:PS01132 | PANTHER:PTHR11937 | PANTHER:PTHR11937:SF276 | SMART:SM00268 | SUPFAM:SSF53067 |
| UniParc:UPI0004EF09F0 | : | : | : | : | : |
Description
BnaA04g29020DBnaA04g29020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JFN4]
Coordinates
chrLK034707:-:4805..6697
Molecular Weight (calculated)
36759.0 Da
IEP (calculated)
4.906
GRAVY (calculated)
-0.203
Length
331 amino acids
Sequence
(BLAST)
(BLAST)
001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMYPIE HGIVNNWDDM EKIWHHTFYN ELRVAPEEHP ILLTEAPLNP KANREKMTQI
101: MFETFNAPAM YVAIQAVLSL YASGRTTGIV LDSGDGVSHT VPIYEGYALP HAILRLDLAG RDLTDAFMKI LTERGYSFTT TAEREIVRDI KEKLCYIALD
201: YEQELETANT SSSVEKNYEM PDGQVITIGA ERFRCPEVLY QPSMIGMENP GIHETTGGTT MFPGIADRMS KEITALAPSS MKIKVVAPPE RKYSVWIGGS
301: ILASLSTFQQ MWIAKAEYDE SGPSIVHRKC F
101: MFETFNAPAM YVAIQAVLSL YASGRTTGIV LDSGDGVSHT VPIYEGYALP HAILRLDLAG RDLTDAFMKI LTERGYSFTT TAEREIVRDI KEKLCYIALD
201: YEQELETANT SSSVEKNYEM PDGQVITIGA ERFRCPEVLY QPSMIGMENP GIHETTGGTT MFPGIADRMS KEITALAPSS MKIKVVAPPE RKYSVWIGGS
301: ILASLSTFQQ MWIAKAEYDE SGPSIVHRKC F
001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF
Arabidopsis Description
ACT1Actin-3 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ47]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.