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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • extracellular 3
  • endoplasmic reticulum 3
  • vacuole 3
  • plasma membrane 3
  • golgi 3
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, secretory
BaCelLo:secretory
MultiLoc:cytosol
Predotar:secretory
PProwler:mitochondrion
TargetP:secretory
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX74944
CDX79746
CDX91373
CDX93360
CDX94448
CDY07779
CDY46076
CDY63965
CDY65255

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G37620.1 CDY46076 AT2G23420.1 21798944
AT2G37620.1 CDY63965 AT2G23420.1 21798944
AT2G37620.1 CDX74944 AT2G37620.1 21798944
AT2G37620.1 CDX79746 AT2G37620.1 21798944
AT2G37620.1 CDX91373 AT2G37620.1 21798944
AT2G37620.1 CDX93360 AT2G37620.1 21798944
AT2G37620.1 CDX94448 AT2G37620.1 21798944
AT2G37620.1 CDY07779 AT2G37620.1 21798944
AT2G37620.1 CDY65255 AT2G37620.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY07779 Canola cytosol 94.62 100.0
CDY65255 Canola cytosol 86.02 96.68
CDX93360 Canola cytosol 85.48 96.07
Bra000010.1-P Field mustard cytosol 94.35 93.1
CDX74944 Canola cytosol 93.55 92.31
CDX91373 Canola cytosol 93.55 92.31
CDX78202 Canola cytosol 93.01 91.78
AT2G37620.1 Thale cress cytosol 93.01 91.78
CDX76191 Canola cytosol 92.74 91.51
CDX73527 Canola cytosol 86.56 91.22
CDY30846 Canola cytosol 92.2 90.98
GSMUA_Achr10P... Banana cytosol 63.98 90.49
GSMUA_AchrUn_... Banana plasma membrane 91.67 90.45
KRH38098 Soybean cytosol 91.13 89.92
CDX82985 Canola cytosol 91.13 89.92
CDX71119 Canola cytosol 90.86 89.66
CDX99111 Canola cytosol 90.86 89.66
CDY21777 Canola cytosol 90.86 89.66
CDY38066 Canola cytosol 90.86 89.66
CDY53444 Canola cytosol 90.86 89.66
CDX88698 Canola cytosol 90.86 89.66
CDX86081 Canola cytosol 90.86 89.66
KRH10268 Soybean mitochondrion, nucleus 90.86 89.66
KRH71847 Soybean endoplasmic reticulum, nucleus 90.86 89.66
KRH56507 Soybean endoplasmic reticulum, mitochondrion 90.59 89.39
VIT_06s0004g04570.t01 Wine grape cytosol 90.32 89.36
KRG93168 Soybean mitochondrion, nucleus 90.32 89.12
KRH23061 Soybean endoplasmic reticulum, mitochondrion, nucleus 90.32 89.12
KRH29804 Soybean endoplasmic reticulum, mitochondrion, nucleus 90.32 89.12
VIT_13s0019g01240.t01 Wine grape cytosol 90.32 89.12
KRH67068 Soybean endoplasmic reticulum, mitochondrion, nucleus 90.05 88.86
KRG95386 Soybean cytosol 90.05 88.86
VIT_08s0007g06520.t01 Wine grape cytosol 89.78 88.59
CDY48688 Canola cytosol 80.91 88.53
CDX69885 Canola cytosol 89.52 88.33
KRH70465 Soybean mitochondrion, nucleus 89.52 88.33
KRH01660 Soybean mitochondrion, nucleus 89.52 88.33
CDY21607 Canola cytosol 89.52 88.33
CDX94448 Canola cytosol 91.67 88.11
CDY01102 Canola cytosol 88.98 87.8
CDX81140 Canola cytosol 88.98 87.8
CDY56544 Canola cytosol 88.98 87.8
CDX85794 Canola cytosol 83.06 87.54
CDY30296 Canola cytosol 83.06 87.54
CDY40061 Canola cytosol 83.06 87.54
CDY31972 Canola cytosol 83.06 87.54
CDY08455 Canola cytosol 88.71 87.53
PGSC0003DMT400023026 Potato cytosol 88.71 87.53
Solyc10g086460.1.1 Tomato unclear 87.63 86.47
PGSC0003DMT400049429 Potato cytosol 87.63 86.47
GSMUA_Achr7P18630_001 Banana cytosol 73.66 85.62
CDX87810 Canola cytosol 86.29 85.15
CDX95498 Canola cytosol 84.68 83.55
CDY18545 Canola cytosol 84.68 83.55
CDY61982 Canola cytosol 84.68 83.55
CDX92272 Canola cytosol 84.68 83.55
CDX82326 Canola cytosol 84.41 83.29
CDX99315 Canola cytosol 72.04 82.97
CDX92271 Canola cytosol 69.35 81.39
KRH24799 Soybean cytosol 86.02 78.05
Solyc09g010750.1.1 Tomato cytosol 35.22 73.18
CDX67573 Canola cytosol 57.8 70.72
CDY71336 Canola cytosol 51.61 69.82
CDY14813 Canola cytosol 60.22 63.82
CDY06885 Canola cytosol 56.18 63.14
CDY33033 Canola nucleus 73.66 50.65
CDX80274 Canola nucleus 72.58 49.18
CDY00172 Canola cytosol 41.67 39.85
CDY20066 Canola cytosol 41.67 39.85
CDY52404 Canola cytosol 41.94 39.49
CDY13674 Canola cytosol 41.94 39.49
CDY62715 Canola cytosol 36.83 37.74
CDX67843 Canola cytosol 36.29 37.5
CDY56730 Canola cytosol 36.29 37.5
CDX71774 Canola cytosol 35.22 36.69
CDY52344 Canola cytosol 36.29 33.5
CDY19213 Canola cytosol 39.52 33.26
CDY26159 Canola cytosol 39.52 33.26
CDX83847 Canola cytosol 39.25 33.26
CDX96721 Canola cytosol 38.98 33.1
CDY21087 Canola cytosol 35.48 30.91
CDY34585 Canola cytosol 35.22 30.68
CDX98005 Canola cytosol 34.95 30.45
CDY19392 Canola cytosol 34.68 30.21
CDY42404 Canola cytosol 29.03 25.29
Protein Annotations
MapMan:20.2.1Gene3D:3.30.420.40Gene3D:3.90.640.10GO:A0A078CRF8InterPro:ActinInterPro:Actin/actin-like_CS
InterPro:Actin_CSEnsemblPlants:CDX79746ProteinID:CDX79746ProteinID:CDX79746.1GO:GO:0000166GO:GO:0003674
GO:GO:0005488GO:GO:0005524EnsemblPlantsGene:GSBRNA2T00132568001PFAM:PF00022PRINTS:PR00190ScanProsite:PS00406
ScanProsite:PS00432ScanProsite:PS01132PANTHER:PTHR11937PANTHER:PTHR11937:SF355SMART:SM00268SUPFAM:SSF53067
UniParc:UPI0004EF3224:::::
Description
BnaC03g20820D
Coordinates
chrLK031818:+:2066268..2068333
Molecular Weight (calculated)
41522.9 Da
IEP (calculated)
5.899
GRAVY (calculated)
-0.241
Length
372 amino acids
Sequence
(BLAST)
001: MFSRYFFFKS YPFVLQKGSK MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN
101: WDDMEKIWHH TFYNELRVAP EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG GYALPHAILR LDLAGRDLTD
201: AFMKILTERG YSFTTTAERE IVRDIKEKLC YIALDYEQEL ETSKTSSSVE KNYEMPDGQV ITIGAERFRC PEVLYQPSMI GMENPGIHET TYNSIMNGGT
301: TMFPGIADRM SKEITALAPS SMKIKVVAPP ERKYSVWIGG SILASLSTFQ QMWIAKAEYD ESGPSIVHRK CF
Best Arabidopsis Sequence Match ( AT2G37620.1 )
(BLAST)
001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF
Arabidopsis Description
ACT1Actin-3 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ47]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.