Factsheet for PGSC0003DMT400049429

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400010254
PGSC0003DMT400023026
PGSC0003DMT400049429

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37620.1	PGSC0003DMT400010254	AT2G23420.1	21798944
AT2G37620.1	PGSC0003DMT400023026	AT2G37620.1	21798944
AT2G37620.1	PGSC0003DMT400049429	AT2G37620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g086460.1.1	Tomato	unclear	99.73	99.73
GSMUA_AchrUn_...	Banana	plasma membrane	95.23	95.23
GSMUA_Achr10P...	Banana	cytosol	66.31	95.06
PGSC0003DMT400023026	Potato	cytosol	94.69	94.69
PGSC0003DMT400071331	Potato	cytosol	94.69	94.69
AT5G59370.2	Thale cress	cytosol	94.69	94.69
PGSC0003DMT400060225	Potato	cytosol	94.43	94.43
PGSC0003DMT400077954	Potato	cytosol	94.43	94.43
AT3G46520.2	Thale cress	cytosol	94.43	94.43
PGSC0003DMT400076499	Potato	cytosol	48.28	94.3
PGSC0003DMT400060953	Potato	cytosol	94.16	94.16
PGSC0003DMT400047481	Potato	cytosol	94.16	94.16
Bra019486.1-P	Field mustard	cytosol	94.16	94.16
CDY38066	Canola	cytosol	94.16	94.16
CDY21777	Canola	cytosol	94.16	94.16
AT3G12110.1	Thale cress	cytosol	93.9	93.9
PGSC0003DMT400010174	Potato	cytosol	93.9	93.9
CDX99111	Canola	cytosol	93.9	93.9
CDX88698	Canola	cytosol	93.9	93.9
CDX86081	Canola	cytosol	93.9	93.9
CDX82985	Canola	cytosol	93.9	93.9
AT2G37620.1	Thale cress	cytosol	93.9	93.9
AT3G53750.2	Thale cress	cytosol	93.9	93.9
Bra018210.1-P	Field mustard	cytosol	93.9	93.9
CDX71119	Canola	cytosol	93.9	93.9
Bra033819.1-P	Field mustard	cytosol	93.9	93.9
Bra006719.1-P	Field mustard	cytosol	82.49	93.67
CDX76191	Canola	cytosol	93.63	93.63
Bra014865.1-P	Field mustard	cytosol	93.63	93.63
CDY53444	Canola	cytosol	93.63	93.63
Bra007025.1-P	Field mustard	cytosol	93.37	93.37
Bra000010.1-P	Field mustard	cytosol	93.37	93.37
CDX78202	Canola	cytosol	93.37	93.37
PGSC0003DMT400001169	Potato	cytosol	93.37	93.12
Bra034778.1-P	Field mustard	cytosol	93.1	93.1
CDY01102	Canola	cytosol	93.1	93.1
CDX91373	Canola	cytosol	93.1	93.1
CDY30846	Canola	cytosol	93.1	93.1
CDX74944	Canola	cytosol	93.1	93.1
CDY48688	Canola	cytosol	83.82	92.94
Bra020319.1-P	Field mustard	cytosol	83.82	92.94
CDX73527	Canola	cytosol	87.0	92.92
CDY08455	Canola	cytosol	92.84	92.84
Bra017166.1-P	Field mustard	cytosol	92.84	92.84
CDY07779	Canola	cytosol	86.47	92.61
CDY65255	Canola	cytosol	80.9	92.14
CDX93360	Canola	cytosol	80.9	92.14
Bra005178.1-P	Field mustard	cytosol	86.47	92.09
GSMUA_Achr7P18630_001	Banana	cytosol	77.19	90.94
CDX94448	Canola	cytosol	90.45	88.11
CDX79746	Canola	cytosol	86.47	87.63
Bra003156.1-P	Field mustard	cytosol	46.42	84.95
PGSC0003DMT400076501	Potato	cytosol	44.83	84.5
PGSC0003DMT400087294	Potato	mitochondrion	56.23	77.37
CDY71336	Canola	cytosol	53.58	73.45
PGSC0003DMT400022210	Potato	cytosol	68.7	70.38
PGSC0003DMT400074882	Potato	cytosol	67.64	68.92
PGSC0003DMT400022205	Potato	cytosol	66.58	68.58
CDX67573	Canola	cytosol	53.32	66.12
PGSC0003DMT400074887	Potato	cytosol	63.93	65.14
PGSC0003DMT400088088	Potato	cytosol	32.63	63.4
Bra002571.1-P	Field mustard	nucleus	93.63	58.35
CDY33033	Canola	nucleus	76.39	53.23
CDX80274	Canola	nucleus	75.07	51.55
PGSC0003DMT400052197	Potato	cytosol	43.5	41.1
PGSC0003DMT400019210	Potato	cytosol	38.46	40.28
PGSC0003DMT400056033	Potato	cytosol	42.18	36.55
PGSC0003DMT400027956	Potato	cytosol	39.52	34.57
PGSC0003DMT400038724	Potato	cytosol	31.57	27.17

Protein Annotations

EntrezGene:102601944	MapMan:20.2.1	Gene3D:3.30.420.40	Gene3D:3.90.640.10	InterPro:Actin	InterPro:Actin/actin-like_CS
InterPro:Actin_CS	ProteinID:CAA39282	ProteinID:CAA39282.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856
UniProt:M1BNQ4	PFAM:PF00022	EnsemblPlantsGene:PGSC0003DMG400019204	PGSC:PGSC0003DMG400019204	EnsemblPlants:PGSC0003DMT400049429	PRINTS:PR00190
ScanProsite:PS00406	ScanProsite:PS01132	PANTHER:PTHR11937	PANTHER:PTHR11937:SF366	SMART:SM00268	SUPFAM:SSF53067
UniParc:UPI000296BE2F	EMBL:X55753	RefSeq:XP_006349510.1	:	:	:

Description

Actin [Source:PGSC_GENE;Acc:PGSC0003DMG400019204]

Coordinates

chr10:-:51265898..51269284

Molecular Weight (calculated)

41673.1 Da

IEP (calculated)

5.286

GRAVY (calculated)

-0.141

Length

377 amino acids

Sequence
(BLAST)

001: MADVDDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN CPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTEH LAKILTERGY
201: SFTTSAEKEI VRDMKEKLAY IALDFEQELD MVKSSSSVEK NFELPDGQVI TIGAERFRCP EVLFQPSTIG MEAAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGSTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEFDESGPS IVHRKCF

Best Arabidopsis Sequence Match ( AT2G37620.4 )
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF

Arabidopsis Description

ACT1Actin-3 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.