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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 3
  • mitochondrion 1
  • cytoskeleton 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytoskeleton, cytosol
BaCelLo:cytosol
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytoskeleton
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX74944
CDX79746
CDX91373
CDX93360
CDX94448
CDY07779
CDY46076
CDY63965
CDY65255

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G37620.1 CDY46076 AT2G23420.1 21798944
AT2G37620.1 CDY63965 AT2G23420.1 21798944
AT2G37620.1 CDX74944 AT2G37620.1 21798944
AT2G37620.1 CDX79746 AT2G37620.1 21798944
AT2G37620.1 CDX91373 AT2G37620.1 21798944
AT2G37620.1 CDX93360 AT2G37620.1 21798944
AT2G37620.1 CDX94448 AT2G37620.1 21798944
AT2G37620.1 CDY07779 AT2G37620.1 21798944
AT2G37620.1 CDY65255 AT2G37620.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX74944 Canola cytosol 100.0 100.0
Bra005178.1-P Field mustard cytosol 93.37 99.44
CDY65255 Canola cytosol 87.0 99.09
CDY07779 Canola cytosol 92.31 98.86
CDX93360 Canola cytosol 86.74 98.79
CDX78202 Canola cytosol 98.41 98.41
CDX73527 Canola cytosol 92.04 98.3
CDX76191 Canola cytosol 98.14 98.14
AT2G37620.1 Thale cress cytosol 97.88 97.88
CDY30846 Canola cytosol 97.61 97.61
CDX82985 Canola cytosol 97.08 97.08
GSMUA_Achr10P... Banana cytosol 67.64 96.96
CDX71119 Canola cytosol 96.82 96.82
CDX99111 Canola cytosol 96.82 96.82
CDY21777 Canola cytosol 96.82 96.82
CDY53444 Canola cytosol 96.82 96.82
CDX88698 Canola cytosol 96.82 96.82
CDX86081 Canola cytosol 96.82 96.82
GSMUA_AchrUn_... Banana plasma membrane 96.55 96.55
CDY38066 Canola cytosol 96.55 96.55
KRH38098 Soybean cytosol 96.55 96.55
CDY48688 Canola cytosol 87.0 96.47
KRH71847 Soybean endoplasmic reticulum, nucleus 96.29 96.29
KRH10268 Soybean mitochondrion, nucleus 96.29 96.29
KRH56507 Soybean endoplasmic reticulum, mitochondrion 96.02 96.02
VIT_06s0004g04570.t01 Wine grape cytosol 95.76 96.01
KRG93168 Soybean mitochondrion, nucleus 95.76 95.76
KRH23061 Soybean endoplasmic reticulum, mitochondrion, nucleus 95.76 95.76
KRH29804 Soybean endoplasmic reticulum, mitochondrion, nucleus 95.76 95.76
VIT_13s0019g01240.t01 Wine grape cytosol 95.76 95.76
KRH67068 Soybean endoplasmic reticulum, mitochondrion, nucleus 95.49 95.49
KRG95386 Soybean cytosol 95.49 95.49
VIT_08s0007g06520.t01 Wine grape cytosol 95.23 95.23
KRH70465 Soybean mitochondrion, nucleus 95.23 95.23
KRH01660 Soybean mitochondrion, nucleus 95.23 95.23
CDY01102 Canola cytosol 94.96 94.96
CDX69885 Canola cytosol 94.96 94.96
CDY21607 Canola cytosol 94.96 94.96
CDY08455 Canola cytosol 94.69 94.69
CDX85794 Canola cytosol 88.59 94.62
CDY40061 Canola cytosol 88.59 94.62
CDY31972 Canola cytosol 88.59 94.62
CDY30296 Canola cytosol 88.59 94.62
CDY56544 Canola cytosol 94.43 94.43
PGSC0003DMT400023026 Potato cytosol 94.43 94.43
CDX81140 Canola cytosol 94.43 94.43
CDX94448 Canola cytosol 96.29 93.8
CDX79746 Canola cytosol 92.31 93.55
GSMUA_Achr7P18630_001 Banana cytosol 79.05 93.12
Solyc10g086460.1.1 Tomato unclear 93.1 93.1
PGSC0003DMT400049429 Potato cytosol 93.1 93.1
CDX87810 Canola cytosol 91.78 91.78
CDX99315 Canola cytosol 77.72 90.71
CDY18545 Canola cytosol 90.19 90.19
CDX95498 Canola cytosol 90.19 90.19
CDX92272 Canola cytosol 90.19 90.19
CDY61982 Canola cytosol 90.19 90.19
CDX82326 Canola cytosol 89.92 89.92
CDX92271 Canola cytosol 75.07 89.27
Solyc09g010750.1.1 Tomato cytosol 41.11 86.59
KRH24799 Soybean cytosol 91.51 84.15
CDY71336 Canola cytosol 56.76 77.82
CDY14813 Canola cytosol 65.78 70.66
CDX67573 Canola cytosol 56.76 70.39
CDY06885 Canola cytosol 61.54 70.09
CDY33033 Canola nucleus 79.05 55.08
CDX80274 Canola nucleus 77.72 53.37
CDY20066 Canola cytosol 44.3 42.93
CDY00172 Canola cytosol 44.3 42.93
CDY13674 Canola cytosol 44.56 42.53
CDY52404 Canola cytosol 44.56 42.53
CDY62715 Canola cytosol 37.4 38.84
CDY56730 Canola cytosol 36.87 38.61
CDX67843 Canola cytosol 36.87 38.61
CDX71774 Canola cytosol 35.54 37.53
CDY26159 Canola cytosol 42.44 36.2
CDY19213 Canola cytosol 42.44 36.2
CDX83847 Canola cytosol 41.91 35.99
CDX96721 Canola cytosol 41.64 35.84
CDY52344 Canola cytosol 36.87 34.49
CDY21087 Canola cytosol 37.93 33.49
CDY34585 Canola cytosol 37.67 33.26
CDX98005 Canola cytosol 37.4 33.02
CDY19392 Canola cytosol 37.14 32.79
CDY42404 Canola cytosol 30.77 27.17
Protein Annotations
EnsemblPlants:CDX91373EnsemblPlantsGene:GSBRNA2T00152673001Gene3D:3.30.420.40Gene3D:3.90.640.10GO:A0A078CFP1InterPro:Actin
InterPro:Actin/actin-like_CSInterPro:Actin_CSPANTHER:PTHR11937PANTHER:PTHR11937:SF276PFAM:PF00022PRINTS:PR00190
ProteinID:CDX91373ProteinID:CDX91373.1ScanProsite:PS00406ScanProsite:PS00432ScanProsite:PS01132SMART:SM00268
SUPFAM:SSF53067UniParc:UPI0004EE0F65MapMan:20.2.1:::
Description
BnaC04g07770D
Coordinates
chrLK031867:+:411547..414273
Molecular Weight (calculated)
41877.2 Da
IEP (calculated)
5.050
GRAVY (calculated)
-0.227
Length
377 amino acids
Sequence
(BLAST)
001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA FMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TSNTNSSVEK NYEMPDGQVI TIGAERFRCP EVLYQPSMIG MENPGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF
Best Arabidopsis Sequence Match ( AT2G37620.4 )
(BLAST)
001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF
Arabidopsis Description
ACT1Actin-3 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ47]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.