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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 3
  • mitochondrion 1
  • cytoskeleton 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol
BaCelLo:cytosol
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytoskeleton
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX72943
CDX96432

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G49240.1 CDX72943 AT1G72770.1 19033529
AT1G49240.1 CDX96432 AT1G72770.1 19033529
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d019635_P001 Maize cytosol 39.43 90.58
Zm00001d016605_P001 Maize cytosol 43.53 87.34
CDX92272 Canola cytosol 99.05 83.29
CDX95498 Canola cytosol 99.05 83.29
CDY18545 Canola cytosol 99.05 83.29
AT1G49240.1 Thale cress cytosol 98.74 83.02
CDX82326 Canola cytosol 98.74 83.02
CDY61982 Canola cytosol 98.74 83.02
Zm00001d016508_P001 Maize cytosol 35.96 82.61
CDX99315 Canola cytosol 81.39 79.88
Zm00001d019396_P001 Maize cytosol 41.96 79.17
TraesCS5D01G132200.1 Wheat golgi 90.85 77.63
GSMUA_Achr7P10410_001 Banana cytosol 91.48 76.92
KRH64098 Soybean cytosol 91.17 76.66
PGSC0003DMT400010174 Potato cytosol 91.17 76.66
PGSC0003DMT400047481 Potato cytosol 91.17 76.66
Solyc03g078400.2.1 Tomato nucleus, plastid 91.17 76.66
Solyc11g005330.1.1 Tomato nucleus 91.17 76.66
GSMUA_Achr9P03170_001 Banana cytosol 90.85 76.6
CDX69885 Canola cytosol 90.85 76.39
CDX81140 Canola cytosol 90.85 76.39
CDY01102 Canola cytosol 90.85 76.39
CDY21607 Canola cytosol 90.85 76.39
CDY56544 Canola cytosol 90.85 76.39
EES08028 Sorghum cytosol 90.85 76.39
GSMUA_Achr2P16160_001 Banana cytosol 90.85 76.39
GSMUA_Achr6P25350_001 Banana cytosol 90.85 76.39
HORVU5Hr1G117900.1 Barley cytosol 90.85 76.39
KRH43389 Soybean cytosol 90.85 76.39
KRH59535 Soybean cytosol 90.85 76.39
Os05t0106600-01 Rice nucleus 90.85 76.39
TraesCS5B01G124100.1 Wheat cytosol 90.85 76.39
TraesCS5B01G516100.1 Wheat cytosol 90.85 76.39
TraesCS5D01G516200.1 Wheat cytosol 90.85 76.39
CDX87810 Canola cytosol 90.54 76.13
CDY08455 Canola cytosol 90.54 76.13
EER90564 Sorghum cytosol 90.54 76.13
KXG23031 Sorghum cytosol 90.54 76.13
Os11t0163100-01 Rice nucleus, plasma membrane, plastid 90.54 76.13
Zm00001d053177_P004 Maize cytosol 90.54 76.13
TraesCS4A01G356100.2 Wheat cytosol 90.85 75.99
GSMUA_Achr10P... Banana cytosol 90.22 75.86
GSMUA_Achr11P... Banana cytosol 90.22 75.86
GSMUA_Achr8P02660_001 Banana cytosol 90.22 75.86
KXG21029 Sorghum cytosol 90.22 75.86
Os01t0964133-01 Rice plasma membrane 90.22 75.86
TraesCS1B01G024500.1 Wheat golgi, nucleus 90.22 75.86
TraesCS1D01G020000.1 Wheat cytosol 90.22 75.86
Zm00001d011086_P005 Maize cytosol 90.22 75.86
Zm00001d035720_P002 Maize cytosol 90.22 75.86
CDX85794 Canola cytosol 84.23 75.64
CDY40061 Canola cytosol 84.23 75.64
CDX71119 Canola cytosol 89.91 75.6
CDX82985 Canola cytosol 89.91 75.6
CDX86081 Canola cytosol 89.91 75.6
CDX88698 Canola cytosol 89.91 75.6
CDX99111 Canola cytosol 89.91 75.6
CDY30846 Canola cytosol 89.91 75.6
GSMUA_Achr3P02960_001 Banana cytosol 89.91 75.6
GSMUA_Achr8P16150_001 Banana cytosol 89.91 75.6
CDX76191 Canola cytosol 89.59 75.33
CDY21777 Canola cytosol 89.59 75.33
CDY38066 Canola cytosol 89.59 75.33
CDY53444 Canola cytosol 89.59 75.33
Os03t0836000-01 Rice plasma membrane, plastid 89.59 75.33
Zm00001d012277_P001 Maize cytosol 89.27 75.27
GSMUA_Achr9P08850_001 Banana cytosol 82.65 75.07
CDY30296 Canola cytosol 83.6 75.07
CDY31972 Canola cytosol 83.6 75.07
CDX74944 Canola cytosol 89.27 75.07
CDX78202 Canola cytosol 89.27 75.07
CDX91373 Canola cytosol 89.27 75.07
KRH53856 Soybean endoplasmic reticulum, mitochondrion 78.55 75.0
GSMUA_Achr5P29190_001 Banana cytosol 82.02 74.71
EES01810 Sorghum cytosol 88.33 74.47
Zm00001d035722_P007 Maize plasma membrane 90.22 74.29
GSMUA_Achr11P... Banana cytosol 81.7 74.21
Os05t0438800-01 Rice plasma membrane, plastid 88.01 74.2
Zm00001d042731_P002 Maize extracellular, plasma membrane, plastid 87.7 73.94
HORVU1Hr1G074350.1 Barley cytosol 87.38 73.67
TraesCS1A01G274400.1 Wheat golgi 87.38 73.67
TraesCS1B01G283900.1 Wheat cytosol 87.38 73.67
TraesCS1D01G274400.1 Wheat cytosol 87.38 73.67
CDX73527 Canola cytosol 82.02 73.65
CDY48688 Canola cytosol 78.86 73.53
CDY07779 Canola cytosol 81.39 73.3
EES19603 Sorghum cytosol 86.75 73.14
KXG21030 Sorghum cytosol 89.59 73.01
Zm00001d034761_P002 Maize cytosol 90.22 72.96
Zm00001d010159_P002 Maize extracellular, plasma membrane 86.44 72.87
CDX93360 Canola cytosol 75.08 71.9
CDY65255 Canola cytosol 74.76 71.6
Zm00001d003298_P001 Maize cytosol 58.68 70.72
CDX94448 Canola cytosol 86.12 70.54
TraesCS5A01G124300.2 Wheat golgi 90.85 70.42
HORVU1Hr1G002840.6 Barley plasma membrane 90.22 70.27
TraesCS1A01G020500.2 Wheat cytosol 90.22 70.27
Zm00001d007792_P001 Maize cytosol 58.04 69.7
CDX79746 Canola cytosol 81.39 69.35
Os01t0866100-01 Rice plasma membrane 43.53 67.98
GSMUA_Achr6P34320_001 Banana cytosol 52.05 67.62
Zm00001d004087_P001 Maize cytosol 46.06 67.59
GSMUA_Achr2P08030_001 Banana cytosol 72.56 65.71
GSMUA_Achr10P... Banana cytosol 56.47 65.09
Zm00001d011087_P001 Maize plastid 90.22 63.0
CDY71336 Canola cytosol 54.57 62.91
VIT_04s0044g00580.t01 Wine grape extracellular 91.17 62.83
CDX67573 Canola cytosol 59.62 62.17
CDY14813 Canola cytosol 68.77 62.11
Zm00001d008746_P001 Maize cytosol 53.0 61.09
HORVU5Hr1G039850.3 Barley mitochondrion 87.07 59.35
CDY06885 Canola cytosol 58.68 56.19
Zm00001d004855_P002 Maize cytoskeleton, cytosol, nucleus 89.59 48.14
CDY33033 Canola nucleus 70.35 41.22
CDX80274 Canola nucleus 69.09 39.89
CDY00172 Canola cytosol 47.63 38.82
CDY20066 Canola cytosol 47.63 38.82
CDY13674 Canola cytosol 47.95 38.48
CDY52404 Canola cytosol 47.95 38.48
Zm00001d034421_P004 Maize plastid 48.58 32.91
CDY62715 Canola cytosol 34.38 30.03
CDX96721 Canola cytosol 40.69 29.45
CDX67843 Canola cytosol 33.44 29.44
CDY56730 Canola cytosol 33.44 29.44
CDX71774 Canola cytosol 33.12 29.41
CDY19213 Canola cytosol 41.01 29.41
CDY26159 Canola cytosol 41.01 29.41
CDX83847 Canola cytosol 40.69 29.39
CDY21087 Canola cytosol 37.22 27.63
CDY34585 Canola cytosol 36.91 27.4
CDX98005 Canola cytosol 36.59 27.17
CDY19392 Canola cytosol 36.28 26.93
CDY52344 Canola cytosol 34.07 26.8
CDY42404 Canola cytosol 30.6 22.72
Protein Annotations
EnsemblPlants:CDX92271EnsemblPlantsGene:GSBRNA2T00153993001Gene3D:3.30.420.40Gene3D:3.90.640.10GO:A0A078DSM2InterPro:Actin
InterPro:Actin/actin-like_CSInterPro:Actin_CSPANTHER:PTHR11937PANTHER:PTHR11937:SF276PFAM:PF00022PRINTS:PR00190
ProteinID:CDX92271ProteinID:CDX92271.1ScanProsite:PS00406ScanProsite:PS01132SMART:SM00268SUPFAM:SSF53067
UniParc:UPI0004EE62FDMapMan:20.2.1::::
Description
BnaA05g21360D
Coordinates
chrLK031871:+:1203039..1204753
Molecular Weight (calculated)
35324.3 Da
IEP (calculated)
4.991
GRAVY (calculated)
-0.199
Length
317 amino acids
Sequence
(BLAST)
001: MAEADDIQPI VCDNGTGMVK AGFAGDDAPR AVFPSVVGRP RHHGVMVGMN QKDAYVGDEA QSKRGILTLK YPIEHGVVSN WDDMEKIWHH TFYNELRIAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN SPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG FSLPHAILRL DLAGRDLTDY LMKILTERGY
201: MFTTTAEREI VRDIKEKLSF VAVDYEQEME TSKTSSSIEK NYELPDGQVI TIGAERFRCP EVLFQPSFVG MEAAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFSG IAIFPRR
Best Arabidopsis Sequence Match ( AT1G49240.1 )
(BLAST)
001: MADADDIQPI VCDNGTGMVK AGFAGDDAPR AVFPSVVGRP RHHGVMVGMN QKDAYVGDEA QSKRGILTLK YPIEHGVVSN WDDMEKIWHH TFYNELRIAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN SPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG FSLPHAILRL DLAGRDLTDY LMKILTERGY
201: MFTTTAEREI VRDIKEKLSF VAVDYEQEME TSKTSSSIEK NYELPDGQVI TIGAERFRCP EVLFQPSFVG MEAAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFSG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIS KAEYDEAGPG IVHRKCF
Arabidopsis Description
ACT8Actin-8 [Source:UniProtKB/Swiss-Prot;Acc:Q96293]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.