CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96721	Canola	cytosol	98.18	98.4
CDY26159	Canola	cytosol	96.36	95.7
CDY19213	Canola	cytosol	96.36	95.7
AT1G18450.1	Thale cress	cytosol	95.67	95.24
PGSC0003DMT400056033	Potato	cytosol	77.9	78.62
KRH66446	Soybean	nucleus	79.5	78.43
Solyc12g037980.1.1	Tomato	nucleus	77.45	78.16
KRH48882	Soybean	nucleus	78.36	77.13
KRH41617	Soybean	nucleus	73.58	74.94
Os08t0137200-01	Rice	nucleus	70.39	69.75
EER93001	Sorghum	cytosol	69.7	69.07
Zm00001d027326_P001	Maize	cytosol, extracellular, nucleus	68.79	68.17
GSMUA_Achr8P16860_001	Banana	endoplasmic reticulum	73.35	68.08
TraesCS5B01G358500.1	Wheat	cytosol	68.56	67.95
TraesCS5D01G364800.1	Wheat	cytosol	68.56	67.95
TraesCS5A01G356000.1	Wheat	cytosol, nucleus	68.34	67.72
TraesCS6B01G189000.1	Wheat	cytosol	68.11	67.49
TraesCS6D01G149800.1	Wheat	cytosol	67.43	66.82
TraesCS6A01G162300.2	Wheat	cytosol	67.2	66.59
HORVU6Hr1G032610.8	Barley	cytosol	68.34	62.37
HORVU5Hr1G088030.1	Barley	plastid	67.88	58.66
VIT_17s0000g04010.t01	Wine grape	mitochondrion	58.77	58.37
CDX85794	Canola	cytosol	36.22	45.04
CDY40061	Canola	cytosol	36.22	45.04
CDY31972	Canola	cytosol	35.99	44.76
CDY30296	Canola	cytosol	35.99	44.76
CDX73527	Canola	cytosol	35.31	43.91
CDY56544	Canola	cytosol	37.36	43.5
CDX81140	Canola	cytosol	37.36	43.5
CDX87810	Canola	cytosol	37.36	43.5
CDX69885	Canola	cytosol	37.13	43.24
CDY21607	Canola	cytosol	37.13	43.24
CDY48688	Canola	cytosol	33.49	43.24
CDX99315	Canola	cytosol	31.66	43.03
CDY01102	Canola	cytosol	36.9	42.97
CDY08455	Canola	cytosol	36.9	42.97
CDX95498	Canola	cytosol	36.67	42.71
CDX82326	Canola	cytosol	36.67	42.71
CDY61982	Canola	cytosol	36.67	42.71
CDX92272	Canola	cytosol	36.67	42.71
CDY18545	Canola	cytosol	36.67	42.71
CDY65255	Canola	cytosol	32.12	42.6
CDX93360	Canola	cytosol	32.12	42.6
CDY38066	Canola	cytosol	36.45	42.44
CDX71119	Canola	cytosol	36.45	42.44
CDY53444	Canola	cytosol	36.45	42.44
CDX78202	Canola	cytosol	36.45	42.44
CDY30846	Canola	cytosol	36.45	42.44
CDY21777	Canola	cytosol	36.45	42.44
CDX76191	Canola	cytosol	36.45	42.44
CDX99111	Canola	cytosol	36.45	42.44
CDX88698	Canola	cytosol	36.45	42.44
CDX86081	Canola	cytosol	36.45	42.44
CDX82985	Canola	cytosol	36.45	42.44
CDX74944	Canola	cytosol	35.99	41.91
CDX91373	Canola	cytosol	35.99	41.91
CDY07779	Canola	cytosol	33.26	41.48
CDX92271	Canola	cytosol	29.39	40.69
CDX94448	Canola	cytosol	35.31	40.05
CDX79746	Canola	cytosol	33.26	39.25
CDY14813	Canola	cytosol	30.07	37.61
CDY06885	Canola	cytosol	28.25	37.46
CDX67573	Canola	cytosol	23.01	33.22
CDY71336	Canola	cytosol	20.73	33.09
CDY00172	Canola	cytosol	27.56	31.11
CDY20066	Canola	cytosol	27.56	31.11
CDY52404	Canola	cytosol	27.56	30.63
CDY13674	Canola	cytosol	27.56	30.63
CDX67843	Canola	cytosol	23.69	28.89
CDY56730	Canola	cytosol	23.46	28.61
CDY21087	Canola	cytosol	27.56	28.34
CDY34585	Canola	cytosol	27.33	28.1
CDY62715	Canola	cytosol	23.01	27.82
CDX98005	Canola	cytosol	26.88	27.63
CDY19392	Canola	cytosol	26.65	27.4
CDX71774	Canola	cytosol	22.1	27.17
CDY52344	Canola	cytosol	23.46	25.56
CDY42404	Canola	cytosol	24.83	25.53
CDY33033	Canola	nucleus	30.52	24.77
CDX80274	Canola	nucleus	30.75	24.59

Protein Annotations

EnsemblPlants:CDX83847	EnsemblPlantsGene:GSBRNA2T00139607001	Gene3D:3.30.420.40	Gene3D:3.90.640.10	GO:A0A078D3Y7	InterPro:Actin
PANTHER:PTHR11937	PANTHER:PTHR11937:SF274	PFAM:PF00022	PRINTS:PR00190	ProteinID:CDX83847	ProteinID:CDX83847.1
SEG:seg	SMART:SM00268	SUPFAM:SSF53067	UniParc:UPI0004EEA745	MapMan:12.4.6.1	:

Description

BnaC08g17980D

Coordinates

chrLK031834:-:774397..778152

Molecular Weight (calculated)

48575.9 Da

IEP (calculated)

5.259

GRAVY (calculated)

-0.361

Length

439 amino acids

Sequence
(BLAST)

001: MYGGDEVSAI VVDLGSHTCK AGYAGEDAPK AVFPSVVGAV DGVEAMDVDV DSAKTNSNSE DSKSEKEKGK RKLCVGSQAL NYRRDHMEIL SPIKDGIVSD
101: WDLVDNIWEH AFRSCLMIDP KEHPMLLAEP PLNTQQQREK AAELMFEKYK VPALFMAKNP VLTSFATGRA TSLVVDCGGG STTISPVHEG YVLQKAVVSN
201: PVGGEFLTDC LLKSLESKGI KIRPRYSFKR KEVRPGEFQV EDVGLPDTTE SYKLFCQRMI VGDIKDSICR VPDTPYDDKS YSNIPTTSYE LPDGQTLEIG
301: ADKFKIPDAM FNPSIVQTIP GTEKYAEMIP SVRGLPHMVM ESINKCDVDI RRELYSSILL AGGTSSMQQL KERLEKDLIE ESPHSARVKV LASGNTTERR
401: FSVWIGGSIL ASLGSFQQMW FSKSEYEEHG ASYIQRKCP

Best Arabidopsis Sequence Match ( AT1G18450.1 )
(BLAST)

001: MYGGDEVSAI VVDLGSHTCK AGYAGEDAPK AVFPSVIGAV DGVEAMDVDV DSTKTNSNSE DSKTESEKEK SKRKLYVGSQ AMSYRRDHME VLSPIKDGIV
101: SDWDLVDNIW EHAFKSCLMI DPTEHPMLLA EPPLNTQQQR EKAAELMFEK YKVPALFMAK NPVLTSFATG RATSLVVDCG GGSTTISPVH DGYVLQKAVV
201: SSPLGGEFLT DCLLKSLESK GIKIRPRYSF KRKEVRAGEF QVEDVDIPDT TESYKLFCQR MIVGDIKDSI CRVPDTPYDD KSYSNIPTTS YELPDGQTLE
301: IGADRFKVPD VMFNPSIVQT IPGMEKYAEM IPSVRGLPHM VMESINKCDV DIRRELYSSI LLAGGTSSMQ QLKERLEKDL IEESPHSARV KVLASGNTTE
401: RRFSVWIGGS ILASLGSFQQ MWFSKSEYEE HGASYIQRKC P

Arabidopsis Description

ARP4Actin-related protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q84M92]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.