CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 21132161
nucleus: 27291164

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48882	Soybean	nucleus	96.4	96.19
Solyc12g037980.1.1	Tomato	nucleus	84.94	86.9
PGSC0003DMT400056033	Potato	cytosol	84.94	86.9
KRH41617	Soybean	nucleus	82.25	84.92
CDX83847	Canola	cytosol	78.43	79.5
CDY26159	Canola	cytosol	78.88	79.41
CDY19213	Canola	cytosol	78.65	79.19
CDX96721	Canola	cytosol	77.75	79.0
AT1G18450.1	Thale cress	cytosol	77.98	78.68
GSMUA_Achr8P16860_001	Banana	endoplasmic reticulum	80.0	75.26
Os08t0137200-01	Rice	nucleus	73.93	74.27
EER93001	Sorghum	cytosol	73.48	73.81
Zm00001d027326_P001	Maize	cytosol, extracellular, nucleus	73.03	73.36
TraesCS5D01G364800.1	Wheat	cytosol	73.03	73.36
TraesCS5B01G358500.1	Wheat	cytosol	73.03	73.36
TraesCS5A01G356000.1	Wheat	cytosol, nucleus	72.81	73.14
TraesCS6B01G189000.1	Wheat	cytosol	71.69	72.01
TraesCS6D01G149800.1	Wheat	cytosol	71.24	71.56
TraesCS6A01G162300.2	Wheat	cytosol	71.01	71.33
VIT_17s0000g04010.t01	Wine grape	mitochondrion	67.87	68.33
HORVU6Hr1G032610.8	Barley	cytosol	71.69	66.32
HORVU5Hr1G088030.1	Barley	plastid	72.58	63.58
KRG93168	Soybean	mitochondrion, nucleus	36.85	43.5
KRH56507	Soybean	endoplasmic reticulum, mitochondrion	36.63	43.24
KRH71847	Soybean	endoplasmic reticulum, nucleus	36.63	43.24
KRH38098	Soybean	cytosol	36.63	43.24
KRH10268	Soybean	mitochondrion, nucleus	36.4	42.97
KRH23061	Soybean	endoplasmic reticulum, mitochondrion, nucleus	36.4	42.97
KRH29804	Soybean	endoplasmic reticulum, mitochondrion, nucleus	36.4	42.97
KRH67068	Soybean	endoplasmic reticulum, mitochondrion, nucleus	36.4	42.97
KRG95386	Soybean	cytosol	36.18	42.71
KRH43389	Soybean	cytosol	36.18	42.71
KRH01660	Soybean	mitochondrion, nucleus	36.18	42.71
KRH70465	Soybean	mitochondrion, nucleus	36.18	42.71
KRH59535	Soybean	cytosol	36.18	42.71
KRH64098	Soybean	cytosol	35.96	42.44
KRH53856	Soybean	endoplasmic reticulum, mitochondrion	31.46	42.17
KRH10484	Soybean	endoplasmic reticulum, mitochondrion, nucleus	35.28	41.64
KRH43946	Soybean	endoplasmic reticulum, mitochondrion, nucleus	35.28	41.64
KRH24799	Soybean	cytosol	34.61	37.56
KRH06905	Soybean	cytosol	27.87	31.88
KRG94584	Soybean	cytosol	27.64	31.62
KRH59228	Soybean	nucleus	27.87	28.97
KRH23861	Soybean	cytosol, nucleus	23.15	28.53
KRH13968	Soybean	cytosol, nucleus	22.92	28.25
KRH32953	Soybean	cytosol	22.47	27.7
KRH39934	Soybean	cytosol	20.45	27.58
KRH59222	Soybean	cytosol	11.46	26.56
KRH61849	Soybean	cytosol, nucleus	24.72	25.23

Protein Annotations

EMBL:ACUP02001962	EnsemblPlants:KRH66446	EnsemblPlantsGene:GLYMA_03G107300	EntrezGene:100785066	InterPro:Actin	PANTHER:PTHR11937
PANTHER:PTHR11937:SF274	PFAM:PF00022	ProteinID:KRH66446	ProteinID:KRH66446.1	SEG:seg	SMART:SM00268
SUPFAM:SSF53067	UniParc:UPI00023398FA	UniProt:I1JMM6	MapMan:12.4.6.1	:	:

Description

hypothetical protein

Coordinates

chr3:+:30703094..30720481

Molecular Weight (calculated)

48899.8 Da

IEP (calculated)

4.791

GRAVY (calculated)

-0.333

Length

445 amino acids

Sequence
(BLAST)

001: MYGGDEVSAI VVDLGSHTCK AGYAGEDAPK AVFPSVVGAI DQMDVDEADN GENNSASAPE SNNNVRNADS DKTKGKRKLY VGSQSLGYRR DHMEVLSPFK
101: DGIVADWDIV DSIWDHAFRE CLLIDPKEHP MLLAEPSSNS QQQRERTAEL MFEKYKAPAL FLAKNAVLTS FASGRATSLV VDGGGGSITV APVHDGYVLQ
201: KAVATSPIGG EFLTDCLMKS LESKGITIKP RYSFRRKEIR PGEFQTVDLE FPNTTESYKL YCQRVIASDI KECVCRAPDT PYDESAYSNI PMTSYELPDG
301: QTIEIGADRF KIPDVLFNPS LVQSIPGTES FAEIAPSVRG LPQMVIESIN KCDVDIRREL FSSILLAGGT ASMQQLKERL EKDLLEESPQ AARVKVLASG
401: NATERRFSVW IGGSILASLG SFQQMWFSKS EYEEHGASYI QRKCP

Best Arabidopsis Sequence Match ( AT1G18450.1 )
(BLAST)

001: MYGGDEVSAI VVDLGSHTCK AGYAGEDAPK AVFPSVIGAV DGVEAMDVDV DSTKTNSNSE DSKTESEKEK SKRKLYVGSQ AMSYRRDHME VLSPIKDGIV
101: SDWDLVDNIW EHAFKSCLMI DPTEHPMLLA EPPLNTQQQR EKAAELMFEK YKVPALFMAK NPVLTSFATG RATSLVVDCG GGSTTISPVH DGYVLQKAVV
201: SSPLGGEFLT DCLLKSLESK GIKIRPRYSF KRKEVRAGEF QVEDVDIPDT TESYKLFCQR MIVGDIKDSI CRVPDTPYDD KSYSNIPTTS YELPDGQTLE
301: IGADRFKVPD VMFNPSIVQT IPGMEKYAEM IPSVRGLPHM VMESINKCDV DIRRELYSSI LLAGGTSSMQ QLKERLEKDL IEESPHSARV KVLASGNTTE
401: RRFSVWIGGS ILASLGSFQQ MWFSKSEYEE HGASYIQRKC P

Arabidopsis Description

ARP4Actin-related protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q84M92]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.