CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH39934	Soybean	cytosol	89.75	98.18
KRH13968	Soybean	cytosol, nucleus	89.75	89.75
KRH32953	Soybean	cytosol	88.92	88.92
VIT_13s0064g00730.t01	Wine grape	cytosol	83.66	83.66
CDY56730	Canola	cytosol	79.78	80.0
AT3G60830.1	Thale cress	cytosol	80.06	79.61
Bra003429.1-P	Field mustard	cytosol	79.22	79.44
CDX67843	Canola	cytosol	78.95	79.17
PGSC0003DMT400019210	Potato	cytosol	78.39	78.61
Solyc11g008500.1.1	Tomato	cytosol, nucleus	77.84	78.06
CDX71774	Canola	cytosol	77.01	77.87
CDY62715	Canola	cytosol	77.01	76.58
VIT_00s0214g00170.t01	Wine grape	cytosol	36.57	75.43
EER91551	Sorghum	cytosol	71.47	71.67
Os03t0783000-01	Rice	cytosol, nucleus	70.64	70.83
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	57.06	70.79
TraesCS5D01G429200.1	Wheat	cytosol	70.08	69.89
CDY52344	Canola	cytosol	77.84	69.73
TraesCS5B01G422700.1	Wheat	cytosol	69.81	69.61
TraesCS5A01G420600.1	Wheat	cytosol, nucleus	69.81	69.61
Bra007566.1-P	Field mustard	cytosol	59.28	65.24
Zm00001d014112_P003	Maize	cytosol	71.19	62.23
HORVU5Hr1G102220.2	Barley	plastid	69.81	57.53
KRH53856	Soybean	endoplasmic reticulum, mitochondrion	34.07	37.05
KRG93168	Soybean	mitochondrion, nucleus	38.5	36.87
KRH01660	Soybean	mitochondrion, nucleus	38.5	36.87
KRH70465	Soybean	mitochondrion, nucleus	38.5	36.87
KRH56507	Soybean	endoplasmic reticulum, mitochondrion	38.23	36.6
KRH29804	Soybean	endoplasmic reticulum, mitochondrion, nucleus	37.95	36.34
KRH10268	Soybean	mitochondrion, nucleus	37.67	36.07
KRH10484	Soybean	endoplasmic reticulum, mitochondrion, nucleus	37.67	36.07
KRH23061	Soybean	endoplasmic reticulum, mitochondrion, nucleus	37.67	36.07
KRH38098	Soybean	cytosol	37.4	35.81
KRG95386	Soybean	cytosol	37.4	35.81
KRH71847	Soybean	endoplasmic reticulum, nucleus	37.4	35.81
KRH43946	Soybean	endoplasmic reticulum, mitochondrion, nucleus	37.4	35.81
KRH64098	Soybean	cytosol	37.12	35.54
KRH67068	Soybean	endoplasmic reticulum, mitochondrion, nucleus	37.12	35.54
KRH59535	Soybean	cytosol	37.12	35.54
KRH43389	Soybean	cytosol	37.12	35.54
KRH24799	Soybean	cytosol	34.35	30.24
KRH06905	Soybean	cytosol	29.09	26.99
KRG94584	Soybean	cytosol	28.81	26.74
KRH66446	Soybean	nucleus	28.53	23.15
KRH41617	Soybean	nucleus	27.42	22.97
KRH59228	Soybean	nucleus	26.87	22.66
KRH48882	Soybean	nucleus	27.7	22.42
KRH59222	Soybean	cytosol	11.63	21.88
KRH61849	Soybean	cytosol, nucleus	24.38	20.18

Protein Annotations

EntrezGene:100813266	MapMan:12.4.2.4	Gene3D:3.30.420.40	Gene3D:3.90.640.10	EMBL:ACUP02007161	InterPro:Actin
InterPro:Arp7_plant	EMBL:BT096200	UniProt:C6TF22	EnsemblPlantsGene:GLYMA_12G007600	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006325	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0032502	EnsemblPlants:KRH23861	ProteinID:KRH23861	ProteinID:KRH23861.1	PFAM:PF00022	PRINTS:PR00190
PANTHER:PTHR11937	PANTHER:PTHR11937:SF257	SMART:SM00268	SUPFAM:SSF53067	UniParc:UPI0001B16F09	:

Description

hypothetical protein

Coordinates

chr12:-:558491..562404

Molecular Weight (calculated)

39491.1 Da

IEP (calculated)

4.532

GRAVY (calculated)

-0.067

Length

361 amino acids

Sequence
(BLAST)

001: MEAAVVDVGS KLLKAGFAIP DQTPAMIIPT QMKQLLDDGS VADNSLADNV TVDPVVRGFI RDWDAIEDLL HHVLYTGLGW EIGNEGQILF TDPLCTPKAN
101: KEQLVQLMFE TFNISGFYAS EQAVLSLYAV GRISGCTVDI GHGKIDIAPV IEGAVHHIAS RRFEFGGTDL TNFLAQELGK SNPQVNISMS DVEKIKELYS
201: CCAEDELAYQ KTEYSCPVEK HTLPDGQVIA IGRERYTVGE ALFQPCLLGL EAHGIVDQLV RAISTVSSDN QRQLLENTVV CGGTSSMTGF EERFQKESSL
301: SSSAVQPTLV KPPEYMPENL TMYSAWVGGA ILAKVVFPQN QHITKADYDE TGPSIVHRKC F

Best Arabidopsis Sequence Match ( AT3G60830.1 )
(BLAST)

001: MEALVVDAGS KFLKAGAAIP DQSPAMIIPS QMKRMVDDGS SSADNPTTVF EDVTLDPIER GLIRDWDAME DLLRYVVYTG LGWEEGNEGN ILFTDPLCTP
101: KAIREQLVQL MFETFNVSGF YASEQAVLSL YAVGRISGCT VDIGHGKIDI APVLEGAVQH IASKRFELGG TELTKLFAQE LGKTNPSMNL SMSDVEKLKE
201: QYANCAEDEI AYKKTQNCEI EQHTLPDGQV ISIGRERYSV GEALFQPSIL GLEEHGIVEQ LVRIISTVSS ENHRQLLENT VLCGGTTSMT GFESRFQKEA
301: NLCSSAIRPT LVKPPEYMPE NLGMYSAWVG GAILAKVVFP QNQHVTKADY DETGPSVVHR KCF

Arabidopsis Description

ARP7Actin-related protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4Y5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.