Factsheet for Solyc11g008500.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400019210	Potato	cytosol	98.61	98.61
VIT_13s0064g00730.t01	Wine grape	cytosol	83.06	82.83
Bra003429.1-P	Field mustard	cytosol	79.17	79.17
CDY56730	Canola	cytosol	79.17	79.17
CDX67843	Canola	cytosol	78.89	78.89
AT3G60830.1	Thale cress	cytosol	79.17	78.51
CDX71774	Canola	cytosol	77.22	77.87
KRH32953	Soybean	cytosol	78.06	77.84
KRH23861	Soybean	cytosol, nucleus	78.06	77.84
KRH39934	Soybean	cytosol	71.11	77.58
KRH13968	Soybean	cytosol, nucleus	77.22	77.01
CDY62715	Canola	cytosol	77.5	76.86
VIT_00s0214g00170.t01	Wine grape	cytosol	36.39	74.86
EER91551	Sorghum	cytosol	74.72	74.72
Os03t0783000-01	Rice	cytosol, nucleus	73.89	73.89
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	58.33	72.16
TraesCS5D01G429200.1	Wheat	cytosol	71.39	70.99
TraesCS5A01G420600.1	Wheat	cytosol, nucleus	71.39	70.99
TraesCS5B01G422700.1	Wheat	cytosol	71.11	70.72
CDY52344	Canola	cytosol	77.78	69.48
Bra007566.1-P	Field mustard	cytosol	59.44	65.24
Zm00001d014112_P003	Maize	cytosol	73.61	64.16
HORVU5Hr1G102220.2	Barley	plastid	71.67	58.9
Solyc06g076090.2.1	Tomato	unclear	40.28	38.46
Solyc04g011500.2.1	Tomato	extracellular, nucleus, plastid, unclear	40.28	38.46
Solyc01g104770.2.1	Tomato	nucleus	40.0	38.2
Solyc05g054480.2.1	Tomato	extracellular, nucleus, plastid, unclear	40.0	38.2
Solyc10g080500.1.1	Tomato	extracellular, nucleus, plastid, unclear	40.0	38.2
Solyc10g086460.1.1	Tomato	unclear	40.0	38.2
Solyc11g065990.1.1	Tomato	nucleus, plastid, unclear	40.0	38.2
Solyc04g071260.2.1	Tomato	plastid	39.72	37.93
Solyc11g005330.1.1	Tomato	nucleus	39.44	37.67
Solyc03g078400.2.1	Tomato	nucleus, plastid	39.44	37.67
Solyc09g010750.1.1	Tomato	cytosol	15.83	31.84
Solyc02g094320.2.1	Tomato	cytosol	27.78	25.71
Solyc05g013940.2.1	Tomato	cytosol	28.61	24.01
Solyc04g024530.2.1	Tomato	cytosol	28.33	23.78
Solyc12g037980.1.1	Tomato	nucleus	28.33	23.45
Solyc05g018600.2.1	Tomato	cytosol	26.67	21.92

Protein Annotations

MapMan:12.4.2.4	Gene3D:3.30.420.40	Gene3D:3.90.640.10	InterPro:Actin	InterPro:Arp7_plant	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006325	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0032502	UniProt:K4D5B0	PFAM:PF00022	PRINTS:PR00190	PANTHER:PTHR11937
PANTHER:PTHR11937:SF257	SMART:SM00268	SUPFAM:SSF53067	EnsemblPlantsGene:Solyc11g008500.1	EnsemblPlants:Solyc11g008500.1.1	UniParc:UPI000276A8DD
SEG:seg	:	:	:	:	:

Description

Actin-related protein 7 [Source:Projected from Arabidopsis thaliana (AT3G60830) UniProtKB/Swiss-Prot;Acc:Q8L4Y5]

Coordinates

chr11:+:2674667..2681148

Molecular Weight (calculated)

39538.0 Da

IEP (calculated)

4.556

GRAVY (calculated)

-0.125

Length

360 amino acids

Sequence
(BLAST)

001: MEAVVVDAGS KFLKAGFAIP DQTPAMVIPT QMKRIAEDDE GSLFEEEEVA VDPIERGFVK DWDAMEDLLH HVLYSGLGWE IGNEGQILFT DPLCTPKAIR
101: EQLVQLMFET FNISGFYASE QAVLSLYAVG RISGCTVDVG HGKIDIAPVI EGAVQHIASR RLEVGGLDLT KLLADELSKS NPTVKLNISD VEKLKEQYAC
201: CADDDIAYEK LQHSCLQEKH TLPDGQVITI GKERYTVGEA LFQPSILGND THGIVEQLVH SISSVSSENH RQLLENTVLC GGTATLTGFE DRFQREATLC
301: SSAVRPSLVK PPEYMPENLT SYSAWIGGAI LAKVVFPQNQ HITKADYDES GPSVVHRKCF

Best Arabidopsis Sequence Match ( AT3G60830.1 )
(BLAST)

001: MEALVVDAGS KFLKAGAAIP DQSPAMIIPS QMKRMVDDGS SSADNPTTVF EDVTLDPIER GLIRDWDAME DLLRYVVYTG LGWEEGNEGN ILFTDPLCTP
101: KAIREQLVQL MFETFNVSGF YASEQAVLSL YAVGRISGCT VDIGHGKIDI APVLEGAVQH IASKRFELGG TELTKLFAQE LGKTNPSMNL SMSDVEKLKE
201: QYANCAEDEI AYKKTQNCEI EQHTLPDGQV ISIGRERYSV GEALFQPSIL GLEEHGIVEQ LVRIISTVSS ENHRQLLENT VLCGGTTSMT GFESRFQKEA
301: NLCSSAIRPT LVKPPEYMPE NLGMYSAWVG GAILAKVVFP QNQHVTKADY DETGPSVVHR KCF

Arabidopsis Description

ARP7Actin-related protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4Y5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.