Factsheet for Solyc02g094320.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g024530.2.1
Solyc05g013940.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G27000.1	Solyc04g024530.2.1	AT1G13180.1	17267444
AT3G27000.1	Solyc05g013940.2.1	AT1G13180.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0068g01630.t01	Wine grape	cytosol	94.6	94.6
KRH06905	Soybean	cytosol	93.06	93.06
KRG94584	Soybean	cytosol	93.06	93.06
PGSC0003DMT400052197	Potato	cytosol	94.09	91.73
GSMUA_AchrUn_...	Banana	cytosol	91.26	91.26
Bra025243.1-P	Field mustard	cytosol	85.09	90.44
Zm00001d022558_P001	Maize	cytosol	90.23	90.23
AT3G27000.1	Thale cress	cytosol	90.23	90.23
CDY20066	Canola	cytosol	90.23	90.23
Bra039097.1-P	Field mustard	cytosol	90.23	90.23
EER99952	Sorghum	cytosol	89.97	89.97
CDY00172	Canola	cytosol	89.97	89.97
CDY52404	Canola	cytosol	89.72	88.35
CDY13674	Canola	cytosol	89.72	88.35
TraesCS3D01G362400.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	87.15	87.15
TraesCS3A01G369400.1	Wheat	cytosol	87.15	84.75
TraesCS3B01G401300.2	Wheat	cytosol	86.89	81.25
HORVU4Hr1G007240.3	Barley	cytosol	85.09	70.58
Solyc09g010750.1.1	Tomato	cytosol	21.85	47.49
Solyc04g071260.2.1	Tomato	plastid	44.22	45.62
Solyc11g005330.1.1	Tomato	nucleus	43.44	44.83
Solyc11g065990.1.1	Tomato	nucleus, plastid, unclear	43.44	44.83
Solyc04g011500.2.1	Tomato	extracellular, nucleus, plastid, unclear	43.44	44.83
Solyc03g078400.2.1	Tomato	nucleus, plastid	43.44	44.83
Solyc10g080500.1.1	Tomato	extracellular, nucleus, plastid, unclear	43.19	44.56
Solyc10g086460.1.1	Tomato	unclear	43.19	44.56
Solyc01g104770.2.1	Tomato	nucleus	43.19	44.56
Solyc05g054480.2.1	Tomato	extracellular, nucleus, plastid, unclear	42.93	44.3
Solyc06g076090.2.1	Tomato	unclear	42.93	44.3
Solyc05g013940.2.1	Tomato	cytosol	35.48	32.17
Solyc04g024530.2.1	Tomato	cytosol	34.96	31.7
Solyc12g037980.1.1	Tomato	nucleus	32.13	28.74
Solyc11g008500.1.1	Tomato	cytosol, nucleus	25.71	27.78
Solyc05g018600.2.1	Tomato	cytosol	28.28	25.11

Protein Annotations

MapMan:20.2.2.1.1	Gene3D:3.30.420.40	Gene3D:3.90.640.10	InterPro:Actin	InterPro:Arp2	GO:GO:0000166
GO:GO:0000902	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005856	GO:GO:0005885	GO:GO:0007015	GO:GO:0008150	GO:GO:0009653
GO:GO:0009825	GO:GO:0009987	GO:GO:0010090	GO:GO:0016043	GO:GO:0016049	GO:GO:0030154
GO:GO:0034314	GO:GO:0040007	UniProt:K4BDM7	PFAM:PF00022	PRINTS:PR00190	PANTHER:PTHR11937
PANTHER:PTHR11937:SF149	SMART:SM00268	SUPFAM:SSF53067	EnsemblPlantsGene:Solyc02g094320.2	EnsemblPlants:Solyc02g094320.2.1	UniParc:UPI0002768AAC

Description

Actin-related protein 2 [Source:Projected from Arabidopsis thaliana (AT3G27000) UniProtKB/Swiss-Prot;Acc:Q9LSD6]

Coordinates

chr2:+:54878552..54886959

Molecular Weight (calculated)

44259.7 Da

IEP (calculated)

5.077

GRAVY (calculated)

-0.200

Length

389 amino acids

Sequence
(BLAST)

001: MDNRNVVVCD NGTGYVKCGF AGENFPTSVF PCVVGRPMLR YEESLMEQDL KDIIVGDECL KLRHQLDLSY PVNNGIVQNW DDMGNVWDHA FFNELKIDPT
101: ECKILLTDPP LNPSKNREMM VETMFEKYNF AGVFIQIQAV LTLYAQGLLT GLVIDSGDGV THVVPVVDGY SFPHLTKRMN VAGRHITSYM VDLLLRRGYA
201: MNRSADFETV RDIKEKLCYI SYDYKREYQL GLETTILVKN YTLPDGRVLK VGTERFQAPE ALFTPDLIDV EGDGMADMVF RCIQEMDIDN RMMLYQHIVL
301: SGGSTMYPGL PSRLEKEILD RYLDVVLKGN KDGLKKLRLR IEDPPRRKHM VYLGGAVLAG IMKDAPEFWI NRQDYLEEGV ACLSKCGQA

Best Arabidopsis Sequence Match ( AT3G27000.1 )
(BLAST)

001: MDNKNVVVCD NGTGYVKCGF AGENFPTSVF PCVVGRPLLR YEESLMEQQV KDIVVGETCS ELRHQLDINY PVHNGIVQNW DDMEHVWDHA FYNELKINPS
101: DCKILLTDPP LNPSKNREKM IETMFEKYNF AGVFIQIQAV LTLYAQGLLT GLVIDSGDGV THVVPVVDGY SFPHLTKRMN VAGRHITAYL VDLLSRRGYA
201: MNKTADFETV REIKEKLCYI SYDYKRESQL GLETTILVKN YTLPDGRVIK VGTERFQAPE ALFTPELIDV EGDGMADMVF RCIQEMDIDN RMMLYQHIVL
301: SGGSTMYPGL PSRLEKEIQD RYLDTVLKGN KDGLKKLRLR IEDPPRRKHM VYLGGAVLAG IMKDAPEFWI NREDYMEEGI NCLNKMSQA

Arabidopsis Description

ARP2Actin-related protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSD6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.