Factsheet for TraesCS3A01G369400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G211000.1
TraesCS6B01G240500.1
TraesCS6D01G194100.1
TraesCS7A01G311700.1
TraesCS7B01G211500.1
TraesCS7D01G308200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G27000.1	TraesCS6A01G211000.1	AT1G13180.1	17267444
AT3G27000.1	TraesCS6B01G240500.1	AT1G13180.1	17267444
AT3G27000.1	TraesCS6D01G194100.1	AT1G13180.1	17267444
AT3G27000.1	TraesCS7A01G311700.1	AT1G13180.1	17267444
AT3G27000.1	TraesCS7B01G211500.1	AT1G13180.1	17267444
AT3G27000.1	TraesCS7D01G308200.1	AT1G13180.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G362400.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	94.0	96.66
Zm00001d022558_P001	Maize	cytosol	93.25	95.89
EER99952	Sorghum	cytosol	93.0	95.63
TraesCS3B01G401300.2	Wheat	cytosol	99.25	95.43
GSMUA_AchrUn_...	Banana	cytosol	88.75	91.26
VIT_14s0068g01630.t01	Wine grape	cytosol	86.0	88.43
KRG94584	Soybean	cytosol	85.0	87.4
KRH06905	Soybean	cytosol	84.75	87.15
Solyc02g094320.2.1	Tomato	cytosol	84.75	87.15
Bra039097.1-P	Field mustard	cytosol	84.0	86.38
CDY20066	Canola	cytosol	84.0	86.38
AT3G27000.1	Thale cress	cytosol	83.75	86.12
CDY00172	Canola	cytosol	83.75	86.12
Bra025243.1-P	Field mustard	cytosol	78.75	86.07
CDY13674	Canola	cytosol	83.75	84.81
CDY52404	Canola	cytosol	83.75	84.81
PGSC0003DMT400052197	Potato	cytosol	80.5	80.7
HORVU4Hr1G007240.3	Barley	cytosol	89.25	76.12
TraesCS4A01G356100.2	Wheat	cytosol	42.0	44.33
TraesCS5A01G000400.1	Wheat	golgi	41.5	44.03
TraesCS1A01G274400.1	Wheat	golgi	40.25	42.82
TraesCS3A01G377300.1	Wheat	cytosol	40.0	42.55
TraesCS1A01G020500.2	Wheat	cytosol	42.25	41.52
TraesCS5A01G124300.2	Wheat	golgi	42.25	41.32
TraesCS4A01G264400.3	Wheat	cytosol, plastid	39.25	40.05
TraesCS1A01G179000.1	Wheat	cytosol	39.5	35.11
TraesCS6A01G211000.1	Wheat	cytosol	31.75	29.74
TraesCS5A01G356000.1	Wheat	cytosol, nucleus	30.5	27.54
TraesCS5A01G420600.1	Wheat	cytosol, nucleus	24.75	27.35
TraesCS7A01G311700.1	Wheat	cytosol	29.5	27.06
TraesCS6A01G162300.2	Wheat	cytosol	28.5	25.73
TraesCS2A01G585700.1	Wheat	cytosol	25.0	23.26

Protein Annotations

MapMan:20.2.2.1.1	Gene3D:3.30.420.40	Gene3D:3.90.640.10	InterPro:Actin	InterPro:Arp2	GO:GO:0000166
GO:GO:0000902	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005856	GO:GO:0005885	GO:GO:0007015	GO:GO:0008150	GO:GO:0009653
GO:GO:0009825	GO:GO:0009987	GO:GO:0010090	GO:GO:0016043	GO:GO:0016049	GO:GO:0030154
GO:GO:0034314	GO:GO:0040007	PFAM:PF00022	PRINTS:PR00190	PANTHER:PTHR11937	PANTHER:PTHR11937:SF149
SMART:SM00268	SUPFAM:SSF53067	EnsemblPlantsGene:TraesCS3A01G369400	EnsemblPlants:TraesCS3A01G369400.1	TIGR:cd00012	:

Description

No Description!

Coordinates

chr3A:+:620570555..620581442

Molecular Weight (calculated)

45320.8 Da

IEP (calculated)

5.322

GRAVY (calculated)

-0.166

Length

400 amino acids

Sequence
(BLAST)

001: MTEKREILSV MVGWFCCSNL APTLQYVKCG FAGENFPTSV FPCVVGRPLL RYEESLQEQE LTDIVVGAAC ADLRHQLDVS YPVTNGIVQN WDDMGHIWDH
101: AFYSELKVDP SECKILLTDP PLNPVKNREQ MIETMFEKYN FSGVFIQIQA VLSLYAQGLL TGLVIDSGDG VTHVVPVVDG YSYPHLTKRM NVAGRHITSY
201: LVDLLSRRGY AMNKSADFET VREIKEKLCY ISYDYKREYQ LGLETTILVK SYTLPDGRVI KVGTERFQAP EALFTPELID VEGDGLADMA FHCIQEMDID
301: NRMTLYQHIV LSGGSTMYPG LPSRLEKEIL DRYLDVVLKG NKDGLKKLRL RIEDPPRRKH MVYLGGAVLA GIMKDAPEFW ITKQEYQEEG VACLRKCGQA

Best Arabidopsis Sequence Match ( AT3G27000.1 )
(BLAST)

001: MDNKNVVVCD NGTGYVKCGF AGENFPTSVF PCVVGRPLLR YEESLMEQQV KDIVVGETCS ELRHQLDINY PVHNGIVQNW DDMEHVWDHA FYNELKINPS
101: DCKILLTDPP LNPSKNREKM IETMFEKYNF AGVFIQIQAV LTLYAQGLLT GLVIDSGDGV THVVPVVDGY SFPHLTKRMN VAGRHITAYL VDLLSRRGYA
201: MNKTADFETV REIKEKLCYI SYDYKRESQL GLETTILVKN YTLPDGRVIK VGTERFQAPE ALFTPELIDV EGDGMADMVF RCIQEMDIDN RMMLYQHIVL
301: SGGSTMYPGL PSRLEKEIQD RYLDTVLKGN KDGLKKLRLR IEDPPRRKHM VYLGGAVLAG IMKDAPEFWI NREDYMEEGI NCLNKMSQA

Arabidopsis Description

ARP2Actin-related protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSD6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.