Factsheet for TraesCS3D01G362400.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, cytosol, plasma membrane, golgi

Predictor Summary:

mitochondrion 2
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, secretory
Any Predictor:	cytosol, mitochondrion, secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G211000.1
TraesCS6B01G240500.1
TraesCS6D01G194100.1
TraesCS7A01G311700.1
TraesCS7B01G211500.1
TraesCS7D01G308200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G27000.1	TraesCS6A01G211000.1	AT1G13180.1	17267444
AT3G27000.1	TraesCS6B01G240500.1	AT1G13180.1	17267444
AT3G27000.1	TraesCS6D01G194100.1	AT1G13180.1	17267444
AT3G27000.1	TraesCS7A01G311700.1	AT1G13180.1	17267444
AT3G27000.1	TraesCS7B01G211500.1	AT1G13180.1	17267444
AT3G27000.1	TraesCS7D01G308200.1	AT1G13180.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022558_P001	Maize	cytosol	96.14	96.14
EER99952	Sorghum	cytosol	95.89	95.89
TraesCS3A01G369400.1	Wheat	cytosol	96.66	94.0
GSMUA_AchrUn_...	Banana	cytosol	91.77	91.77
TraesCS3B01G401300.2	Wheat	cytosol	96.4	90.14
VIT_14s0068g01630.t01	Wine grape	cytosol	88.43	88.43
KRG94584	Soybean	cytosol	87.66	87.66
KRH06905	Soybean	cytosol	87.66	87.66
Solyc02g094320.2.1	Tomato	cytosol	87.15	87.15
Bra039097.1-P	Field mustard	cytosol	86.63	86.63
CDY20066	Canola	cytosol	86.63	86.63
AT3G27000.1	Thale cress	cytosol	86.38	86.38
CDY00172	Canola	cytosol	86.38	86.38
Bra025243.1-P	Field mustard	cytosol	81.23	86.34
CDY13674	Canola	cytosol	86.38	85.06
CDY52404	Canola	cytosol	86.38	85.06
PGSC0003DMT400052197	Potato	cytosol	82.78	80.7
HORVU4Hr1G007240.3	Barley	cytosol	92.8	76.97
TraesCS1D01G020000.1	Wheat	cytosol	42.93	44.3
TraesCS5D01G516200.1	Wheat	cytosol	42.67	44.03
TraesCS1D01G177400.1	Wheat	cytosol	42.42	43.77
TraesCS5D01G000400.1	Wheat	cytosol	42.16	43.5
TraesCS1D01G274400.1	Wheat	cytosol	41.13	42.55
TraesCS5D01G132200.1	Wheat	golgi	40.1	42.05
TraesCS4D01G050800.2	Wheat	cytosol	40.1	40.0
TraesCS3D01G370400.3	Wheat	plastid	40.62	38.63
TraesCS6D01G194100.1	Wheat	cytosol	32.65	29.74
TraesCS5D01G364800.1	Wheat	cytosol	31.62	27.77
TraesCS5D01G429200.1	Wheat	cytosol	25.45	27.35
TraesCS7D01G308200.1	Wheat	cytosol	30.85	26.61
TraesCS6D01G149800.1	Wheat	cytosol	30.08	26.41
TraesCS2D01G600800.1	Wheat	cytosol	26.22	23.72

Protein Annotations

MapMan:20.2.2.1.1	Gene3D:3.30.420.40	Gene3D:3.90.640.10	InterPro:Actin	InterPro:Arp2	GO:GO:0000166
GO:GO:0000902	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005856	GO:GO:0005885	GO:GO:0007015	GO:GO:0008150	GO:GO:0009653
GO:GO:0009825	GO:GO:0009987	GO:GO:0010090	GO:GO:0016043	GO:GO:0016049	GO:GO:0030154
GO:GO:0034314	GO:GO:0040007	PFAM:PF00022	PRINTS:PR00190	PANTHER:PTHR11937	PANTHER:PTHR11937:SF149
SMART:SM00268	SUPFAM:SSF53067	EnsemblPlantsGene:TraesCS3D01G362400	EnsemblPlants:TraesCS3D01G362400.1	TIGR:cd00012	SEG:seg

Description

No Description!

Coordinates

chr3D:+:476981869..476994063

Molecular Weight (calculated)

43269.2 Da

IEP (calculated)

5.314

GRAVY (calculated)

-0.199

Length

389 amino acids

Sequence
(BLAST)

001: MESNKVVXXX XXXXYVKCGF AGENFPTSVF PCVVGRPLLR YEESLQEQEL TDIVVGAACA DLRHQLDVSY PVTNGIVQNW DDMGHIWDHA FYSELKVDPS
101: ECKILLTDPP LNPVKNREQM IETMFEKYNF SGVFIQIQAV LSLYAQGLLT GLVIDSGDGV THVVPVVDGY SYPHLTKRMN VAGRHITSYL VDLLSRRGYA
201: MNKSADFETV REIKEKLCYI SYDYKREYQL GLETTILVKS YTLPDGRVIK VGTERFQAPE ALFTPELIDV EGDGLADMAF HCIQEMDIDN RMTLYQHIVL
301: SGGSTMYPGL PSRLEKEILD RYLDVVLKGN KDGLKKLRLR IEDPPRRKHM VYLGGAVLAG IMKDAPEFWI TKQEYQEEGV ACLRKCGQA

Best Arabidopsis Sequence Match ( AT3G27000.1 )
(BLAST)

001: MDNKNVVVCD NGTGYVKCGF AGENFPTSVF PCVVGRPLLR YEESLMEQQV KDIVVGETCS ELRHQLDINY PVHNGIVQNW DDMEHVWDHA FYNELKINPS
101: DCKILLTDPP LNPSKNREKM IETMFEKYNF AGVFIQIQAV LTLYAQGLLT GLVIDSGDGV THVVPVVDGY SFPHLTKRMN VAGRHITAYL VDLLSRRGYA
201: MNKTADFETV REIKEKLCYI SYDYKRESQL GLETTILVKN YTLPDGRVIK VGTERFQAPE ALFTPELIDV EGDGMADMVF RCIQEMDIDN RMMLYQHIVL
301: SGGSTMYPGL PSRLEKEIQD RYLDTVLKGN KDGLKKLRLR IEDPPRRKHM VYLGGAVLAG IMKDAPEFWI NREDYMEEGI NCLNKMSQA

Arabidopsis Description

ARP2Actin-related protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSD6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.