Factsheet for TraesCS2D01G600800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G151300.1
TraesCS5B01G149800.2
TraesCS5D01G156400.2
TraesCS7A01G544700.1
TraesCS7B01G468100.1
TraesCS7D01G531100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G33520.1	TraesCS7A01G544700.1	AT3G12810.1	17142478
AT3G33520.1	TraesCS7B01G468100.1	AT3G12810.1	17142478
AT3G33520.1	TraesCS7D01G531100.1	AT3G12810.1	17142478
AT3G33520.1	TraesCS7A01G544700.1	AT3G12810.1	17470967
AT3G33520.1	TraesCS7B01G468100.1	AT3G12810.1	17470967
AT3G33520.1	TraesCS7D01G531100.1	AT3G12810.1	17470967
AT3G33520.1	TraesCS5A01G151300.1	AT5G37055.1	17142478
AT3G33520.1	TraesCS5B01G149800.2	AT5G37055.1	17142478
AT3G33520.1	TraesCS5D01G156400.2	AT5G37055.1	17142478
AT3G33520.1	TraesCS5A01G151300.1	AT5G37055.1	17470967
AT3G33520.1	TraesCS5B01G149800.2	AT5G37055.1	17470967
AT3G33520.1	TraesCS5D01G156400.2	AT5G37055.1	17470967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G597500.1	Wheat	cytosol	98.84	98.84
TraesCS2A01G585700.1	Wheat	cytosol	98.84	98.84
TraesCS1B01G333100.1	Wheat	cytosol	98.6	98.6
HORVU0Hr1G005770.1	Barley	cytosol	97.67	97.67
OQU79631	Sorghum	cytosol	87.44	87.04
Zm00001d024059_P002	Maize	cytosol	86.98	86.98
Os01t0269900-01	Rice	cytosol	86.28	86.48
GSMUA_AchrUn_...	Banana	cytosol	73.02	72.18
VIT_11s0016g05490.t01	Wine grape	cytosol	68.14	67.67
Bra030818.1-P	Field mustard	cytosol	33.49	64.86
AT3G33520.1	Thale cress	cytosol	63.49	64.85
KRH61849	Soybean	cytosol, nucleus	65.35	64.45
CDY42404	Canola	cytosol	63.49	63.93
Solyc05g018600.2.1	Tomato	cytosol	63.49	62.33
PGSC0003DMT400038724	Potato	cytosol	63.26	62.1
TraesCS1D01G274400.1	Wheat	cytosol	28.84	32.98
TraesCS1D01G177400.1	Wheat	cytosol	28.84	32.89
TraesCS1D01G020000.1	Wheat	cytosol	28.6	32.63
TraesCS5D01G516200.1	Wheat	cytosol	28.37	32.36
TraesCS5D01G000400.1	Wheat	cytosol	27.44	31.3
TraesCS5D01G132200.1	Wheat	golgi	26.74	31.0
TraesCS3D01G370400.3	Wheat	plastid	27.67	29.1
TraesCS4D01G050800.2	Wheat	cytosol	25.81	28.46
TraesCS3D01G362400.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	23.72	26.22
TraesCS6D01G194100.1	Wheat	cytosol	25.81	26.0
TraesCS5D01G429200.1	Wheat	cytosol	20.23	24.03
TraesCS5D01G364800.1	Wheat	cytosol	24.42	23.7
TraesCS6D01G149800.1	Wheat	cytosol	24.42	23.7
TraesCS7D01G308200.1	Wheat	cytosol	22.79	21.73

Protein Annotations

MapMan:12.4.4.4	InterPro:Actin	InterPro:Arp6	GO:GO:0000003	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006338	GO:GO:0006355	GO:GO:0006950
GO:GO:0006970	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008283	GO:GO:0009058
GO:GO:0009266	GO:GO:0009628	GO:GO:0009791	GO:GO:0009845	GO:GO:0009908	GO:GO:0009910
GO:GO:0009987	GO:GO:0016043	PFAM:PF00022	PANTHER:PTHR11937	PANTHER:PTHR11937:SF47	SMART:SM00268
SUPFAM:SSF53067	EnsemblPlantsGene:TraesCS2D01G600800	EnsemblPlants:TraesCS2D01G600800.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr2D:+:651412474..651416351

Molecular Weight (calculated)

48051.6 Da

IEP (calculated)

5.729

GRAVY (calculated)

-0.214

Length

430 amino acids

Sequence
(BLAST)

001: MTGGSRVVVI DNGGGLLKAG FGGDKDPIAV VPNCIAKSPG SNANSKKWLA ADQLQAQDVD VTGMTLRRPI DRGYLINTEV QREVWERVLR SLLQVDPTNS
101: SLLLVEPQFN PPGLQHATDE LVFEEFGFNS LCVADAPSLV HLYEASRQPS LFHTQCSLVV DCGFSFTHAS PVLQNFTLNY AVRRMDLGGK ALTNYLKELV
201: SYRSLNVMDE TLLIDDAKEK LCFVSLDVPR DLRLASLSFK DNPFRCSYIL PDGITYKKGF VKDLDEARRY CSLPVEGELD KKDGDSDTVK DRKKPELSQN
301: EFALTNERFL VPEMLFHPID LGMNQAGLAE CIVRAAQACH PYIQPVLYQS IILTGGSTLF PRFAERLQRE LRPLVPEEYQ VKIISQENPI LGVWRGGSVL
401: ASSPDFGSMC VTKSEYEEMG SARCRRRFFH

Best Arabidopsis Sequence Match ( AT3G33520.1 )
(BLAST)

001: MSNIVVLDNG GGLIKAGQGG ERDPTTVIPN CLYKPLSSKK FIHPSPLTTL SDEIDLTSAA VRRPIDRGYL INSDLQREIW SHLFTSLLHI APSSSSLLLT
101: EAPLSIPSVQ RTTDELVFED FGFSSLYIAH PQSLVHLYEA SRQPDSILSK TQCSLVVDCG FSFTHAVPVL HNFTLNHAIK RIDLGGKAFT NYLKELVSYR
201: SINVMDETFL VDDAKEKLCF VSLDLLRDLR LARNGNTLIK STYVLPDGVT HTKGYVKDPQ AAKRFLSLSE KESVVVMDKV GERKKADMNK NEIDLTNERF
301: LVPETLFQPA DLGMNQAGLA ECIVRAINSC HSYLQPVLYQ SIILTGGSTL FPQLKERLEG ELRPLVPDHF DVKITTQEDP ILGVWRGGSL LASSPDFESM
401: CVTKAEYEEL GSARCRRRFF H

Arabidopsis Description

ARP6SUF3 [Source:UniProtKB/TrEMBL;Acc:A0A178U6Y1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.