CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98203
KRH30163
KRH38118
KRH71872

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G33520.1	KRH38118	AT3G12810.1	17142478
AT3G33520.1	KRH71872	AT3G12810.1	17142478
AT3G33520.1	KRH38118	AT3G12810.1	17470967
AT3G33520.1	KRH71872	AT3G12810.1	17470967
AT3G33520.1	KRG98203	AT5G37055.1	17142478
AT3G33520.1	KRH30163	AT5G37055.1	17142478
AT3G33520.1	KRG98203	AT5G37055.1	17470967
AT3G33520.1	KRH30163	AT5G37055.1	17470967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0016g05490.t01	Wine grape	cytosol	77.98	78.52
PGSC0003DMT400038724	Potato	cytosol	74.54	74.2
Solyc05g018600.2.1	Tomato	cytosol	73.85	73.52
AT3G33520.1	Thale cress	cytosol	69.04	71.5
CDY42404	Canola	cytosol	68.12	69.56
Bra030818.1-P	Field mustard	cytosol	35.32	69.37
GSMUA_AchrUn_...	Banana	cytosol	67.89	68.05
Zm00001d024059_P002	Maize	cytosol	65.14	66.05
TraesCS1B01G333100.1	Wheat	cytosol	64.68	65.58
TraesCS2B01G597500.1	Wheat	cytosol	64.68	65.58
OQU79631	Sorghum	cytosol	64.91	65.51
Os01t0269900-01	Rice	cytosol	64.45	65.5
TraesCS2D01G600800.1	Wheat	cytosol	64.45	65.35
TraesCS2A01G585700.1	Wheat	cytosol	64.45	65.35
HORVU0Hr1G005770.1	Barley	cytosol	63.99	64.88
KRH10484	Soybean	endoplasmic reticulum, mitochondrion, nucleus	29.36	33.95
KRH43946	Soybean	endoplasmic reticulum, mitochondrion, nucleus	29.36	33.95
KRH53856	Soybean	endoplasmic reticulum, mitochondrion	25.69	33.73
KRH01660	Soybean	mitochondrion, nucleus	29.13	33.69
KRH70465	Soybean	mitochondrion, nucleus	29.13	33.69
KRH64098	Soybean	cytosol	29.13	33.69
KRH59535	Soybean	cytosol	29.13	33.69
KRH43389	Soybean	cytosol	29.13	33.69
KRH38098	Soybean	cytosol	29.13	33.69
KRH29804	Soybean	endoplasmic reticulum, mitochondrion, nucleus	28.9	33.42
KRG95386	Soybean	cytosol	28.9	33.42
KRH67068	Soybean	endoplasmic reticulum, mitochondrion, nucleus	28.9	33.42
KRH71847	Soybean	endoplasmic reticulum, nucleus	28.9	33.42
KRH23061	Soybean	endoplasmic reticulum, mitochondrion, nucleus	28.67	33.16
KRH10268	Soybean	mitochondrion, nucleus	28.67	33.16
KRG93168	Soybean	mitochondrion, nucleus	28.44	32.89
KRH56507	Soybean	endoplasmic reticulum, mitochondrion	28.21	32.63
KRH24799	Soybean	cytosol	27.29	29.02
KRH06905	Soybean	cytosol	24.77	27.76
KRG94584	Soybean	cytosol	24.54	27.51
KRH13968	Soybean	cytosol, nucleus	20.87	25.21
KRH41617	Soybean	nucleus	24.77	25.06
KRH59228	Soybean	nucleus	24.31	24.77
KRH66446	Soybean	nucleus	25.23	24.72
KRH32953	Soybean	cytosol	20.41	24.65
KRH48882	Soybean	nucleus	25.0	24.44
KRH23861	Soybean	cytosol, nucleus	20.18	24.38
KRH39934	Soybean	cytosol	17.66	23.33
KRH59222	Soybean	cytosol	9.86	22.4

Protein Annotations

EntrezGene:100819827	MapMan:35.1	ProteinID:ACJ61471.1	EMBL:ACUP02002190	InterPro:Actin	InterPro:Arp6
EnsemblPlantsGene:GLYMA_04G071500	GO:GO:0000003	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006338	GO:GO:0006355	GO:GO:0006950	GO:GO:0006970	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008283	GO:GO:0009058	GO:GO:0009266	GO:GO:0009628
GO:GO:0009791	GO:GO:0009845	GO:GO:0009908	GO:GO:0009910	GO:GO:0009987	GO:GO:0016043
UniProt:I1JUI1	EnsemblPlants:KRH61849	ProteinID:KRH61849	ProteinID:KRH61849.1	PFAM:PF00022	PANTHER:PTHR11937
PANTHER:PTHR11937:SF47	SMART:SM00268	SUPFAM:SSF53067	UniParc:UPI0001E22EFB	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:-:5949695..5955682

Molecular Weight (calculated)

48941.4 Da

IEP (calculated)

6.627

GRAVY (calculated)

-0.234

Length

436 amino acids

Sequence
(BLAST)

001: MSTSTNVVVL DNGGGLIKAG IGGERDPSAI VPNCLYRPPS SKKWLHLHSG DEDLTSAAVR RPMDRGYLIN PDLQREIWSH LFSSVLHINP SQSSLLLTEP
101: LFTPPSIQRS VDELVFEDFN FRALYVAHSP SLVHLHEASR NNANGLLSKA QCSLVLDAGF SFTHASPVFH NFALNYAVKR IDLGGKALTN YLKELVSFRS
201: VNVMEETFII DDVKEKLCFV SLDVNRDLTI ARKSGKENLF RCTYVLPDGV TYTKGFVKYP DQAQRYLALR EGGLHSSSPV QAQEDVNFTE IAEHPENRKR
301: VDLTKNEFDL TNERFLVPEM IFRPADLGMN QAGLAECIVR AVNACHPHLR PVLYESIILT GGSTLFPQFA ERLEKELRPL VPDDYRVKIT TQEDPILGVW
401: RGGSLLASSP DFEAMCVTKS EYEELGSARC RKRFFH

Best Arabidopsis Sequence Match ( AT3G33520.1 )
(BLAST)

001: MSNIVVLDNG GGLIKAGQGG ERDPTTVIPN CLYKPLSSKK FIHPSPLTTL SDEIDLTSAA VRRPIDRGYL INSDLQREIW SHLFTSLLHI APSSSSLLLT
101: EAPLSIPSVQ RTTDELVFED FGFSSLYIAH PQSLVHLYEA SRQPDSILSK TQCSLVVDCG FSFTHAVPVL HNFTLNHAIK RIDLGGKAFT NYLKELVSYR
201: SINVMDETFL VDDAKEKLCF VSLDLLRDLR LARNGNTLIK STYVLPDGVT HTKGYVKDPQ AAKRFLSLSE KESVVVMDKV GERKKADMNK NEIDLTNERF
301: LVPETLFQPA DLGMNQAGLA ECIVRAINSC HSYLQPVLYQ SIILTGGSTL FPQLKERLEG ELRPLVPDHF DVKITTQEDP ILGVWRGGSL LASSPDFESM
401: CVTKAEYEEL GSARCRRRFF H

Arabidopsis Description

ARP6SUF3 [Source:UniProtKB/TrEMBL;Acc:A0A178U6Y1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.