CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
plastid 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG94584
KRH06905
KRH39504
KRH42863
KRH53518
KRH64414
KRH65551
KRH65850
KRH74448

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13180.1	KRH42863	AT1G29170.1	17267444
AT1G13180.1	KRH39504	AT2G22640.1	17267444
AT1G13180.1	KRH74448	AT2G22640.1	17267444
AT1G13180.1	KRG94584	AT3G27000.1	17267444
AT1G13180.1	KRH06905	AT3G27000.1	17267444
AT1G13180.1	KRH53518	AT3G49290.1	17267444
AT1G13180.1	KRH64414	AT3G49290.1	17267444
AT1G13180.1	KRH65551	AT3G49290.1	17267444
AT1G13180.1	KRH65850	AT3G49290.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0137g00280.t01	Wine grape	cytosol	89.72	89.72
KRH59222	Soybean	cytosol	39.25	87.5
PGSC0003DMT400027956	Potato	cytosol	87.15	86.54
Solyc05g013940.2.1	Tomato	cytosol	86.45	86.25
AT1G13180.1	Thale cress	cytosol	85.98	86.18
Solyc04g024530.2.1	Tomato	cytosol	86.22	86.01
Bra019815.1-P	Field mustard	cytosol	84.58	84.78
CDX98005	Canola	cytosol	84.58	84.78
GSMUA_Achr6P21120_001	Banana	cytosol	84.35	84.54
Bra016738.1-P	Field mustard	cytosol	84.11	84.31
CDY19392	Canola	cytosol	84.11	84.31
CDY21087	Canola	cytosol	83.88	84.07
CDY34585	Canola	cytosol	83.64	83.84
GSMUA_Achr2P05970_001	Banana	cytosol	34.58	83.62
Os02t0596900-01	Rice	cytosol	83.41	83.41
TraesCS6D01G194100.1	Wheat	cytosol	82.48	82.67
TraesCS6A01G211000.1	Wheat	cytosol	82.48	82.67
TraesCS6B01G240500.1	Wheat	cytosol	82.24	82.44
GSMUA_Achr9P07630_001	Banana	cytosol	81.78	81.78
Zm00001d017106_P001	Maize	cytosol	82.01	81.06
KXG30555	Sorghum	cytosol	81.54	80.6
HORVU6Hr1G053910.4	Barley	cytosol	80.14	77.6
Zm00001d050981_P001	Maize	cytosol	80.61	75.16
GSMUA_Achr8P01270_001	Banana	cytosol	73.36	73.54
GSMUA_Achr2P05960_001	Banana	cytosol	52.34	73.2
KXG24330	Sorghum	cytosol	72.43	71.26
TraesCS7A01G311700.1	Wheat	cytosol	70.09	68.81
TraesCS7B01G211500.1	Wheat	cytosol	69.63	68.35
Zm00001d049629_P002	Maize	nucleus	58.41	67.93
Os08t0128300-01	Rice	cytosol	28.5	67.78
HORVU7Hr1G074460.5	Barley	cytosol	67.76	66.51
TraesCS7D01G308200.1	Wheat	cytosol	69.63	66.08
Zm00001d008652_P001	Maize	endoplasmic reticulum, plastid	31.07	57.58
KRH53856	Soybean	endoplasmic reticulum, mitochondrion	29.67	38.25
KRH71847	Soybean	endoplasmic reticulum, nucleus	33.64	38.2
KRH29804	Soybean	endoplasmic reticulum, mitochondrion, nucleus	33.64	38.2
KRH38098	Soybean	cytosol	33.64	38.2
KRH23061	Soybean	endoplasmic reticulum, mitochondrion, nucleus	33.41	37.93
KRH67068	Soybean	endoplasmic reticulum, mitochondrion, nucleus	33.41	37.93
KRH70465	Soybean	mitochondrion, nucleus	33.41	37.93
KRH10484	Soybean	endoplasmic reticulum, mitochondrion, nucleus	33.41	37.93
KRH43946	Soybean	endoplasmic reticulum, mitochondrion, nucleus	33.41	37.93
KRH10268	Soybean	mitochondrion, nucleus	33.41	37.93
KRH01660	Soybean	mitochondrion, nucleus	33.41	37.93
KRH59535	Soybean	cytosol	33.18	37.67
KRH64098	Soybean	cytosol	33.18	37.67
KRH56507	Soybean	endoplasmic reticulum, mitochondrion	33.18	37.67
KRH43389	Soybean	cytosol	33.18	37.67
KRG93168	Soybean	mitochondrion, nucleus	33.18	37.67
KRG95386	Soybean	cytosol	33.18	37.67
KRH24799	Soybean	cytosol	31.78	33.17
KRG94584	Soybean	cytosol	30.14	33.16
KRH06905	Soybean	cytosol	29.91	32.9
KRH41617	Soybean	nucleus	28.5	28.31
KRH48882	Soybean	nucleus	29.44	28.25
KRH66446	Soybean	nucleus	28.97	27.87
KRH23861	Soybean	cytosol, nucleus	22.66	26.87
KRH39934	Soybean	cytosol	20.33	26.36
KRH13968	Soybean	cytosol, nucleus	22.2	26.32
KRH32953	Soybean	cytosol	21.73	25.76
KRH61849	Soybean	cytosol, nucleus	24.77	24.31

Protein Annotations

EntrezGene:100780462	MapMan:20.2.2.1.2	Gene3D:3.30.420.40	Gene3D:3.90.640.10	EMBL:ACUP02003307	InterPro:Actin
InterPro:Arp3	EnsemblPlantsGene:GLYMA_05G172600	GO:GO:0000166	GO:GO:0000902	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005856	GO:GO:0005885	GO:GO:0007015	GO:GO:0008150	GO:GO:0009653	GO:GO:0009825
GO:GO:0009987	GO:GO:0010090	GO:GO:0016043	GO:GO:0016049	GO:GO:0030154	GO:GO:0034314
GO:GO:0040007	UniProt:I1K4D7	EnsemblPlants:KRH59228	ProteinID:KRH59228	ProteinID:KRH59228.1	PFAM:PF00022
PRINTS:PR00190	PANTHER:PTHR11937	PANTHER:PTHR11937:SF258	SMART:SM00268	SUPFAM:SSF53067	UniParc:UPI0002339CAF
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:36249908..36254636

Molecular Weight (calculated)

47853.7 Da

IEP (calculated)

5.687

GRAVY (calculated)

-0.266

Length

428 amino acids

Sequence
(BLAST)

001: MDPSTSRPAV VIDNGSGYTK MGFAGNVEPC FNVPTVVAIN ESFLNQSRNS SKGNWVAQHN AGVMADLDFF IGDEALSKSR SSSTYNLSYP IQHGQVENWD
101: AMERFWQQCI FNYLRCDPED HYFLLTESPL TSPESREYTG EIMFETFNVP GLYIGVNSVL ALAAGYTTSK CEMTGVVVDV GDGAAHVVPV ADGYVIGSSI
201: KSIPISGKDI TLFVQQLMRE RGENVPPEDS FEVARKVKEM YCYTCSDIVK EFNKHDKEPA KYIKHWRGIK PKTGAPYSCD IGYERFLGPE IFFNPEIYGS
301: DFTTPLPVVI DKCIQSAPID TRRSLYKNVV LSGGSTMFKD FHRRLQRDLK KIVDARVLLS EARLNGEIKS QPVEVNVLSN PIQRYAVWFG GSVLASTPDF
401: FTACHTKAEY EEYGASICRT NPVFKGMY

Best Arabidopsis Sequence Match ( AT1G13180.1 )
(BLAST)

001: MDPTSRPAIV IDNGTGYTKM GFAGNVEPCF ILPTVVAVNE SFLNQSKSSS KATWQTQHNA GVAADLDFYI GDEALAKSRS SSTHNLHYPI EHGQVEDWDA
101: MERYWQQCIF NYLRCDPEDH YFLLTESPLT PPESREYTGE ILFETFNVPG LYIAVNSVLA LAAGYTTSKC EMTGVVVDVG DGATHVVPVA EGYVIGSCIK
201: SIPIAGKDVT LFIQQLMRER GENIPPEDSF DVARKVKEMY CYTCSDIVKE FNKHDKEPAK YIKQWKGVKP KTGAPYTCDV GYERFLGPEV FFNPEIYSND
301: FTTTLPAVID KCIQSAPIDT RRALYKNIVL SGGSTMFKDF GRRLQRDLKK IVDARVLANN ARTGGEITSQ PVEVNVVSHP VQRFAVWFGG SVLSSTPEFF
401: ASCRTKEEYE EYGASICRTN PVFKGMY

Arabidopsis Description

ARP3Actin-related protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAF1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.